RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 GSTM3P21266 225 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 ALAS2P22557 587 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 P2RY2P41231 377 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 MINDY4Q4G0A6 757 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 IKBIPQ70UQ0 350 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 SLC30A2Q9BRI3 323 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 RSPH9Q9H1X1 276 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 GPN2Q9H9Y4 310 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 RLIMQ9NVW2 624 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 MUTYHQ9UIF7 546 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 GPR34Q9UPC5 381 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 MICAL3Q7RTP6 2002 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 CLDN2P57739 230 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 TAS2R38P59533 333 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 CXCR4P61073 352 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 HYAL1Q12794 435 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 HYAL2Q12891 473 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 TRAM2Q15035 370 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 ZNF385BQ569K4 471 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 SLC27A4Q6P1M0 643 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 C8orf82Q6P1X6 216 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 TRIM73Q86UV7 250 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 MARCH9Q86YJ5 346 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 PSD4Q8NDX1 1056 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 OR4C6Q8NH72 309 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 FAM3CQ92520 227 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 GGHQ92820 318 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 SPACA7Q96KW9 195 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 HHIPQ96QV1 700 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 OR2M4Q96R27 311 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 GFM1Q96RP9 751 aaKnown RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 FOXQ1Q9C009 403 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 NDEL1Q9GZM8 345 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 ANKRA2Q9H9E1 313 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 POLMQ9NP87 494 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 DAPL1A0PJW8 107 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 RIIAD1A6NNX1 92 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 CHST10O43529 356 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 ENTPD6O75354 484 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 PRKRAO75569 313 aaKnown RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 ADH1BP00325 375 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 ADAP00813 363 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 HLA-DQA2P01906 255 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 CERS1P27544 350 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 ITPKBP27987 946 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 BIKQ13323 160 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 GPNMBQ14956 572 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 MLIPQ5VWP3 458 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 TMC8Q8IU68 726 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 SAMD14Q8IZD0 417 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 VN1R2Q8NFZ6 395 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 SLC38A5Q8WUX1 472 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 SPRTNQ9H040 489 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 RBM38Q9H0Z9 239 aaKnown RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 TEX10Q9NXF1 929 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 CYP8B1Q9UNU6 501 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 GMEB1Q9Y692 573 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 OTOFQ9HC10 1997 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 PGRMC2O15173 223 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 CSF2P04141 144 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 FHP07954 510 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 ARAFP10398 606 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 OSMP13725 252 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 CD22P20273 847 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 AK4P27144 223 aaPredicted RBP11.02□□□□□ -0.64
NPHP4-204ENST00000460696 NDUFS1P28331 727 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 SDC2P34741 201 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 GPR4P46093 362 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 MAP4K2Q12851 820 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 RPA4Q13156 261 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 ZNF77Q15935 545 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 DUSP7Q16829 419 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 KDM4DQ6B0I6 523 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 GTF2IRD2BQ6EKJ0 949 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 C22orf42Q6IC83 251 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 ARL9Q6T311 187 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 GTF2IRD2Q86UP8 949 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 AMIGO1Q86WK6 493 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 TTTY10Q9BZA0 68 aa11.02□□□□□ -0.64
NPHP4-204ENST00000460696 C1orf226A1L170 272 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 SOX3P41225 446 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 PPP5CP53041 499 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 RAB25P57735 213 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 HNRNPA0Q13151 305 aaKnown RBP11.02□□□□□ -0.65
NPHP4-204ENST00000460696 C1orf61Q13536 156 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 ANKRD54Q6NXT1 300 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF367Q7RTV3 350 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 LUZP2Q86TE4 346 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 ENTHD1Q8IYW4 607 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF433Q8N7K0 673 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-204ENST00000460696 TMIEQ8NEW7 156 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 OR4K14Q8NGD5 310 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 OR51G2Q8NGK0 314 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 BTBD1Q9H0C5 482 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 QRSL1Q9H0R6 528 aaKnown RBP11.02□□□□□ -0.65
NPHP4-204ENST00000460696 ABCG4Q9H172 646 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 CNIH4Q9P003 139 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 TNFRSF10DQ9UBN6 386 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 FOXE1O00358 373 aaPredicted RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms