RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 C4orf46Q504U0 113 aa14.05□□□□□ -0.16
PTPRU-205ENST00000460170 GALNTL5Q7Z4T8 443 aa14.05□□□□□ -0.16
PTPRU-205ENST00000460170 PDZD3Q86UT5 571 aa14.05□□□□□ -0.16
PTPRU-205ENST00000460170 CEP76Q8TAP6 659 aa14.05□□□□□ -0.16
PTPRU-205ENST00000460170 S100A16Q96FQ6 103 aaKnown RBP14.05□□□□□ -0.16
PTPRU-205ENST00000460170 HSPA12BQ96MM6 686 aa14.05□□□□□ -0.16
PTPRU-205ENST00000460170 MYNNQ9NPC7 610 aa14.05□□□□□ -0.16
PTPRU-205ENST00000460170 ERVK-11Q9UQG0 969 aa14.05□□□□□ -0.16
PTPRU-205ENST00000460170 PHIPQ8WWQ0 1821 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 TSPAN9O75954 239 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 NTSR1P30989 418 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 TUBB3Q13509 450 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 TRAM1Q15629 374 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 CST9Q5W186 159 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 ZNF613Q6PF04 617 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 ZNF782Q6ZMW2 699 aaPredicted RBP14.04□□□□□ -0.16
PTPRU-205ENST00000460170 CSNK1A1LQ8N752 337 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 ZNF583Q96ND8 569 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 TTYH2Q9BSA4 534 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 FAIMQ9NVQ4 179 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 MARCH5Q9NX47 278 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 HCN3Q9P1Z3 774 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 USP22Q9UPT9 525 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 SLC22A31A6NKX4 558 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 CDC123O75794 336 aaPredicted RBP14.04□□□□□ -0.16
PTPRU-205ENST00000460170 PRLP01236 227 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 ALPLP05186 524 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 CDK4P11802 303 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 STOMP27105 288 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 GGT2P36268 569 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 PIN1Q13526 163 aaPredicted RBP14.04□□□□□ -0.16
PTPRU-205ENST00000460170 ZNF548Q8NEK5 533 aaPredicted RBP14.04□□□□□ -0.16
PTPRU-205ENST00000460170 CCDC107Q8WV48 283 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 SH3YL1Q96HL8 342 aaPredicted RBP14.04□□□□□ -0.16
PTPRU-205ENST00000460170 ITGAMP11215 1152 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 ZNF20P17024 532 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 PDHA2P29803 388 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 PYCR1P32322 319 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 CXCR4P61073 352 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 WDR5P61964 334 aaKnown RBP14.04□□□□□ -0.16
PTPRU-205ENST00000460170 MGAT3Q09327 533 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 TBRG1Q3YBR2 411 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 SBSNQ6UWP8 590 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 PLEKHG7Q6ZR37 379 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 SPRED1Q7Z699 444 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 SMPDL3BQ92485 455 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 IL21RQ9HBE5 538 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 ERVK13-1Q9NX77 482 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 MED11Q9P086 117 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 LAMP5Q9UJQ1 280 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 NME7Q9Y5B8 376 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 ZNF726A6NNF4 738 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 GNSP15586 552 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 TACR1P25103 407 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 KLBQ86Z14 1044 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 Q8N402 240 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 SLC44A3Q8N4M1 653 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 LKAAEAR1Q8TD35 194 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 POLDIP3Q9BY77 421 aaKnown RBP14.04□□□□□ -0.16
PTPRU-205ENST00000460170 MTHFD2LQ9H903 347 aaPredicted RBP14.04□□□□□ -0.16
PTPRU-205ENST00000460170 SDHAF3Q9NRP4 125 aa14.04□□□□□ -0.16
PTPRU-205ENST00000460170 PPM1BO75688 479 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 C1SP09871 688 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 RNH1P13489 461 aaKnown RBP14.03□□□□□ -0.16
PTPRU-205ENST00000460170 IGFBP6P24592 240 aaPredicted RBP14.03□□□□□ -0.16
PTPRU-205ENST00000460170 RASGEF1BQ0VAM2 473 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 SH2D5Q6ZV89 423 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 PIWIL3Q7Z3Z3 882 aaKnown RBP14.03□□□□□ -0.16
PTPRU-205ENST00000460170 CEACAM19Q7Z692 300 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 UBE2Q1Q7Z7E8 422 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 CPPED1Q9BRF8 314 aaPredicted RBP14.03□□□□□ -0.16
PTPRU-205ENST00000460170 TAS2R10Q9NYW0 307 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 CPED1A4D0V7 1026 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 A8MU76 341 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 M0R3H8 397 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 DBIP07108 87 aaKnown RBP14.03□□□□□ -0.16
PTPRU-205ENST00000460170 PRLHRP49683 370 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 RNF144AP50876 292 aaPredicted RBP14.03□□□□□ -0.16
PTPRU-205ENST00000460170 SGSHP51688 502 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 ZNF234Q14588 700 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 SEC23BQ15437 767 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 LRIT3Q3SXY7 679 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 GGTA1PQ4G0N0 100 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 FIGNL1Q6PIW4 674 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 MFSD6LQ8IWD5 586 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 MCEMP1Q8IX19 187 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 RNF175Q8N4F7 328 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 RFT1Q96AA3 541 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 ACTRT3Q9BYD9 372 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 ABCG2Q9UNQ0 655 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 A0A0X1KG70 313 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 LRRN3E7EW58 273 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 NPC1O15118 1278 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 CBLP22681 906 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 MAP2K3P46734 347 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 TMEM207Q6UWW9 146 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 C12orf40Q86WS4 652 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 ZNF227Q86WZ6 799 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 JAGN1Q8N5M9 183 aa14.03□□□□□ -0.16
PTPRU-205ENST00000460170 IQCF1Q8N6M8 205 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms