RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 ADAP2Q9NPF8 381 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 PRDM7Q9NQW5 492 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 NMRK1Q9NWW6 199 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 C1orf109Q9NX04 203 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 ASIC5Q9NY37 505 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 TMED5Q9Y3A6 229 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 CLCA3PQ9Y6N3 262 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 SPACA6W5XKT8 324 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 PRSS44E7EML9 344 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 CYR61O00622 381 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 CTNSO60931 367 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 PEX11AO75192 247 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 ITGA10O75578 1167 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 WISP2O76076 250 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 SEMA3DO95025 777 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 TGFB1P01137 390 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 ALDOCP09972 364 aaKnown RBP16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 ESRRAP11474 423 aaPredicted RBP16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 IDO1P14902 403 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 PCSK2P16519 638 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 ZNF24P17028 368 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 TRHRP34981 398 aaPredicted RBP16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 RPS13P62277 151 aaKnown RBP16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 RPL38P63173 70 aaKnown RBP16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 GSTA3Q16772 222 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 AP5B1Q2VPB7 878 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 GALNTL6Q49A17 601 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 TMEM35AQ53FP2 167 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 TMEM198Q66K66 360 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 SLC34A3Q8N130 599 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 CPSF7Q8N684 471 aaKnown RBP16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 FNDC5Q8NAU1 212 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 MTFMTQ96DP5 389 aaKnown RBP16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 CCDC120Q96HB5 630 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 MS4A8Q9BY19 250 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 TRIM45Q9H8W5 580 aaPredicted RBP16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 NOP53Q9NZM5 478 aaKnown RBP16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 VPS29Q9UBQ0 182 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 SLC12A4Q9UP95 1085 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 CAPN7Q9Y6W3 813 aa16.74■□□□□ 0.27
SQSTM1-204ENST00000453046 MYOCOSA0A1B0GUC4 107 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 TGFBR3LH3BV60 316 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 RTCAO00442 366 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 ASNA1O43681 348 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 ZFAND5O76080 213 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 TNNI3P19429 210 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 NCF2P19878 526 aaPredicted RBP16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 MAPK1P28482 360 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 SSR2P43308 183 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 SSR4P51571 173 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 STX1BP61266 288 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 EMX2Q04743 252 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 ELAVL1Q15717 326 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 SPIN4Q56A73 249 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 MRGPRGQ86SM5 289 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 CYP4Z2PQ8N1L4 340 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 ARMC10Q8N2F6 343 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 ACOT4Q8N9L9 421 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 DAZLQ92904 295 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 FCRL1Q96LA6 429 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 CENPKQ9BS16 269 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 ALOXE3Q9BYJ1 711 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 LYRM4Q9HD34 91 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 AIG1Q9NVV5 245 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 GIMAP2Q9UG22 337 aa16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 PPIEQ9UNP9 301 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 KLF13Q9Y2Y9 288 aaPredicted RBP16.73■□□□□ 0.27
SQSTM1-204ENST00000453046 CACNA1DQ01668 2161 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 KLRC4-KLRK1H3BQV0 150 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 SAP18O00422 153 aaKnown RBP16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 ABOP16442 354 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 HIST1H1TP22492 207 aaPredicted RBP16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 CPN2P22792 545 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 ATP5A1P25705 553 aaKnown RBP16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 RAP1GDS1P52306 607 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 CUL3Q13618 768 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 SERTAD2Q14140 314 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 C3AR1Q16581 482 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 SP5Q6BEB4 398 aaPredicted RBP16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 RPTNQ6XPR3 784 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 ZNF793Q6ZN11 406 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 UBE3DQ7Z6J8 389 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 SPPL2CQ8IUH8 684 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 GHDCQ8N2G8 530 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 MAPKAP1Q9BPZ7 522 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 BRINP2Q9C0B6 783 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 OR51B5Q9H339 312 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 KCMF1Q9P0J7 381 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 TINAGQ9UJW2 476 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 ZNF223Q9UK11 482 aaPredicted RBP16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 ERVK-11Q9UQG0 969 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 EIF3LQ9Y262 564 aaKnown RBP16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 YARS2Q9Y2Z4 477 aaKnown RBP16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 CLDN16Q9Y5I7 305 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 CRYBG3Q68DQ2 2970 aa16.72■□□□□ 0.27
SQSTM1-204ENST00000453046 ARHGAP10A1A4S6 786 aa16.71■□□□□ 0.27
SQSTM1-204ENST00000453046 A8MVJ9 347 aa16.71■□□□□ 0.27
SQSTM1-204ENST00000453046 CAPN14A8MX76 684 aa16.71■□□□□ 0.27
SQSTM1-204ENST00000453046 LDB3O75112 727 aa16.71■□□□□ 0.27
SQSTM1-204ENST00000453046 ETHE1O95571 254 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms