RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 HIST1H2AGP0C0S8 130 aaPredicted RBP18.21■□□□□ 0.51
HMGA1-205ENST00000447654 ATXN1LP0C7T5 689 aaKnown RBP18.21■□□□□ 0.51
HMGA1-205ENST00000447654 HIST1H2ADP20671 130 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 PCGF2P35227 344 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 LIMS1P48059 325 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 RFX3P48380 749 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 PIK3CGP48736 1102 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 CCDC85BQ15834 202 aaPredicted RBP18.21■□□□□ 0.51
HMGA1-205ENST00000447654 CRTC2Q53ET0 693 aaPredicted RBP18.21■□□□□ 0.51
HMGA1-205ENST00000447654 DGKKQ5KSL6 1271 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 HIST2H2AA3Q6FI13 130 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 MRPS24Q96EL2 167 aaKnown RBP18.21■□□□□ 0.51
HMGA1-205ENST00000447654 C1GALT1C1Q96EU7 318 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 HHIPL1Q96JK4 782 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 LCORQ96JN0 433 aaPredicted RBP18.21■□□□□ 0.51
HMGA1-205ENST00000447654 HIST1H2AHQ96KK5 128 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 HIST1H2AJQ99878 128 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 SARGQ9BW04 601 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 COMMD10Q9Y6G5 202 aa18.21■□□□□ 0.51
HMGA1-205ENST00000447654 PLSCR5A0PG75 271 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 IRGMA1A4Y4 181 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 LGALS8O00214 317 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 AGRPO00253 132 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 RAB36O95755 333 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 SOD1P00441 154 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 CD86P42081 329 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 HNMTP50135 292 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 PRMT2P55345 433 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 CTBP2P56545 445 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 IFI44LQ53G44 452 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 LRRC28Q86X40 367 aaPredicted RBP18.2■□□□□ 0.5
HMGA1-205ENST00000447654 LRRC46Q96FV0 321 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 RNF32Q9H0A6 362 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 SLC6A14Q9UN76 642 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 L7N2F9 121 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 VNN2O95498 520 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 FGF1P05230 155 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 NR2F6P10588 404 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 HAPLN1P10915 354 aaPredicted RBP18.2■□□□□ 0.5
HMGA1-205ENST00000447654 HLA-DPA1P20036 260 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 RBMS1P29558 406 aaKnown RBP18.2■□□□□ 0.5
HMGA1-205ENST00000447654 AVPR1BP47901 424 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 CDH12P55289 794 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 WNT4P56705 351 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 RPS7P62081 194 aaKnown RBP18.2■□□□□ 0.5
HMGA1-205ENST00000447654 CYP4F8P98187 520 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 RBBP4Q09028 425 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 ZRANB3Q5FWF4 1079 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 TMPRSS9Q7Z410 1059 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 TMEM173Q86WV6 379 aaPredicted RBP18.2■□□□□ 0.5
HMGA1-205ENST00000447654 RGL4Q8IZJ4 473 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 SLC5A11Q8WWX8 675 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 LINGO1Q96FE5 620 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 CYSLTR2Q9NS75 346 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 PRKAG2Q9UGJ0 569 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 FBXL2Q9UKC9 423 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 SPATA2Q9UM82 520 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 EDARQ9UNE0 448 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 KCTD3Q9Y597 815 aa18.2■□□□□ 0.5
HMGA1-205ENST00000447654 SPIN1Q9Y657 262 aaPredicted RBP18.2■□□□□ 0.5
HMGA1-205ENST00000447654 TMEM129A0AVI4 362 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 FAM74A7A6NL05 159 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 MAGEB17A8MXT2 336 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 TMEM189-UBE2V1I3L0A0 370 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 PRAF2O60831 178 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 NDUFS3O75489 264 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 ITGA10O75578 1167 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 MMP2P08253 660 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 DRD2P14416 443 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 JUPP14923 745 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 SYN1P17600 705 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 KIR3DL1P43629 444 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 NOGQ13253 232 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 SWI5Q1ZZU3 235 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 FAM74A3Q4VXF1 159 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 SLC25A30Q5SVS4 291 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 RAET1GQ6H3X3 334 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 PGAP1Q75T13 922 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 BTN2A1Q7KYR7 527 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 ZNF454Q8N9F8 522 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 OR8J1Q8NGP2 316 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 SPPL2AQ8TCT8 520 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 TCEAL3Q969E4 200 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 SENP5Q96HI0 755 aaPredicted RBP18.19■□□□□ 0.5
HMGA1-205ENST00000447654 EVA1AQ9H8M9 152 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 STARD7Q9NQZ5 370 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 CREBZFQ9NS37 354 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 SCML2Q9UQR0 700 aa18.19■□□□□ 0.5
HMGA1-205ENST00000447654 MOXD2PA6NHM9 499 aa18.18■□□□□ 0.5
HMGA1-205ENST00000447654 TMEM229AB2RXF0 380 aa18.18■□□□□ 0.5
HMGA1-205ENST00000447654 FPGTO14772 594 aa18.18■□□□□ 0.5
HMGA1-205ENST00000447654 ST8SIA5O15466 376 aa18.18■□□□□ 0.5
HMGA1-205ENST00000447654 SSNA1O43805 119 aa18.18■□□□□ 0.5
HMGA1-205ENST00000447654 PRMT3O60678 531 aa18.18■□□□□ 0.5
HMGA1-205ENST00000447654 EIF1BO60739 113 aaKnown RBP18.18■□□□□ 0.5
HMGA1-205ENST00000447654 INHAP05111 366 aa18.18■□□□□ 0.5
HMGA1-205ENST00000447654 PRPH2P23942 346 aa18.18■□□□□ 0.5
HMGA1-205ENST00000447654 ACSL1P33121 698 aa18.18■□□□□ 0.5
HMGA1-205ENST00000447654 EIF1P41567 113 aaKnown RBP18.18■□□□□ 0.5
HMGA1-205ENST00000447654 SRSF11Q05519 484 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms