RNA–Protein interactions for RNA: ENST00000439120.1

AC004540.1-201, humanhuman

TSL 2 BASIC

Gene AC004540.1, Length 891 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-201ENST00000439120 CDH13P55290 713 aa16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 C1orf185Q5T7R7 199 aa16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 TMEM64Q6YI46 380 aa16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 LRRC25Q8N386 305 aaPredicted RBP16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 OR7G1Q8NGA0 311 aa16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 TRPC4APQ8TEL6 797 aa16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 ZNF483Q8TF39 744 aaPredicted RBP16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 BRINP2Q9C0B6 783 aa16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 BRF2Q9HAW0 419 aa16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 MCCC2Q9HCC0 563 aa16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 FARSBQ9NSD9 589 aaKnown RBP16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 CNOT11Q9UKZ1 510 aaKnown RBP16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 PSME2Q9UL46 239 aa16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 FAM215AQ9Y5M1 114 aa16.96■□□□□ 0.31
AC004540.1-201ENST00000439120 C15orf38-AP3S2A0A0A6YYH1 394 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 ANKRD33BA6NCL7 494 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 LRRC3CA6NJW4 275 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 ERAL1O75616 437 aaKnown RBP16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 TOXO94900 526 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 CT62P0C5K7 136 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 MSX1P28360 303 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 ECHS1P30084 290 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 FBXW4P57775 412 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 FUT7Q11130 342 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 SLC48A1Q6P1K1 146 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 LETMD1Q6P1Q0 360 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 PACS2Q86VP3 889 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 CLYBLQ8N0X4 340 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 VWA5B2Q8N398 1253 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 ZNF441Q8N8Z8 693 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 ACBD4Q8NC06 268 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 NEIL3Q8TAT5 605 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 MTBPQ96DY7 904 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 TREX2Q9BQ50 279 aaPredicted RBP16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 FAIM2Q9BWQ8 316 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 SLC6A15Q9H2J7 730 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 ACKR4Q9NPB9 350 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 NPDC1Q9NQX5 325 aaPredicted RBP16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 SPRR3Q9UBC9 169 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 TRPS1Q9UHF7 1281 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 CFL2Q9Y281 166 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 PCDHA9Q9Y5H5 950 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 HCFC1P51610 2035 aa16.95■□□□□ 0.3
AC004540.1-201ENST00000439120 CSMD2Q7Z408 3487 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 TRAPPC6AO75865 159 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 SUPT7LO94864 414 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 OR4F21O95013 312 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 SNX4O95219 450 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 ESRRBO95718 433 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 KRT6AP02538 564 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 KRT6BP04259 564 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 CSNK2A2P19784 350 aaPredicted RBP16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 KRT6CP48668 564 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 ALDH9A1P49189 494 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 CLCQ05315 142 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 TFF3Q07654 80 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 TOMM20Q15388 145 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 CDH24Q86UP0 819 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 PRR22Q8IZ63 422 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 ZNF615Q8N8J6 731 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 C17orf47Q8NEP4 570 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 KLHL29Q96CT2 875 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 RILPQ96NA2 401 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 SECISBP2Q96T21 854 aaKnown RBP16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 C1QTNF3Q9BXJ4 246 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 PROK2Q9HC23 129 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 SLC24A3Q9HC58 644 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 BCAP29Q9UHQ4 241 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 NFU1Q9UMS0 254 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 ZNF780BQ9Y6R6 833 aa16.94■□□□□ 0.3
AC004540.1-201ENST00000439120 PDZD2O15018 2839 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 A0A0G2JNJ9 132 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 A0A1B0GTL3 188 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 KIF2AO00139 706 aaPredicted RBP16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 PPP6CO00743 305 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 TRIM3O75382 744 aaPredicted RBP16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 ABHD2P08910 425 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 IGFBP2P18065 325 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 ENDOUP21128 410 aaKnown RBP16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 HMOX2P30519 316 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 FEN1P39748 380 aaKnown RBP16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 KRTAP10-9P60411 292 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 GALNT1Q10472 559 aaPredicted RBP16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 MYBPHQ13203 477 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 RASA2Q15283 850 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 RTL6Q6ICC9 239 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 WDR53Q7Z5U6 358 aaPredicted RBP16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 DMRTC2Q8IXT2 367 aaPredicted RBP16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 C1orf52Q8N6N3 182 aaKnown RBP16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 CDYL2Q8N8U2 506 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 SPPL2AQ8TCT8 520 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 HBEGFQ99075 208 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 ZNF559Q9BR84 538 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 METTL7AQ9H8H3 244 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 PFDN4Q9NQP4 134 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 VPS29Q9UBQ0 182 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 Q9UFV3 132 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 NCKAP5O14513 1909 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 OTOGQ6ZRI0 2925 aa16.93■□□□□ 0.3
AC004540.1-201ENST00000439120 NINQ8N4C6 2090 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms