RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 ETFAP13804 333 aa12.55□□□□□ -0.4
PRPF39-202ENST00000424478 HOXB9P17482 250 aaPredicted RBP12.55□□□□□ -0.4
PRPF39-202ENST00000424478 STAT5AP42229 794 aa12.55□□□□□ -0.4
PRPF39-202ENST00000424478 CCT3P49368 545 aaKnown RBP12.55□□□□□ -0.4
PRPF39-202ENST00000424478 PUM1Q14671 1186 aaKnown RBP eCLIP12.55□□□□□ -0.4
PRPF39-202ENST00000424478 NIPAL1Q6NVV3 410 aa12.55□□□□□ -0.4
PRPF39-202ENST00000424478 QSOX2Q6ZRP7 698 aa12.55□□□□□ -0.4
PRPF39-202ENST00000424478 ANKRD37Q7Z713 158 aa12.55□□□□□ -0.4
PRPF39-202ENST00000424478 PCYOX1LQ8NBM8 494 aa12.55□□□□□ -0.4
PRPF39-202ENST00000424478 OR5P2Q8WZ92 322 aa12.55□□□□□ -0.4
PRPF39-202ENST00000424478 CXorf21Q9HAI6 301 aa12.55□□□□□ -0.4
PRPF39-202ENST00000424478 DDX18Q9NVP1 670 aaKnown RBP12.55□□□□□ -0.4
PRPF39-202ENST00000424478 TCFL5Q9UL49 500 aa12.55□□□□□ -0.4
PRPF39-202ENST00000424478 WASF3Q9UPY6 502 aa12.55□□□□□ -0.4
PRPF39-202ENST00000424478 WBP11Q9Y2W2 641 aaKnown RBP12.55□□□□□ -0.4
PRPF39-202ENST00000424478 TPRP12270 2363 aaKnown RBP12.54□□□□□ -0.4
PRPF39-202ENST00000424478 PIEZO2Q9H5I5 2752 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 TCRBV16S1A1N1A0A5B0 115 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 CDC14CA4D256 554 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 CLIC1O00299 241 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 KRT16P08779 473 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 RNF144AP50876 292 aaPredicted RBP12.54□□□□□ -0.4
PRPF39-202ENST00000424478 OR4D2P58180 307 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 DNASE1L3Q13609 305 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 ZNF628Q5EBL2 1059 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 GALNT12Q8IXK2 581 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 ST13P4Q8IZP2 240 aaPredicted RBP12.54□□□□□ -0.4
PRPF39-202ENST00000424478 OR10A6Q8NH74 314 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 LRFN5Q96NI6 719 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 TPT1P8Q9HAU6 139 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 BTNL2Q9UIR0 455 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 KCNE3Q9Y6H6 103 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 A0A096LPI6 279 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 TRBV5-3A0A0A0MS03 114 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 HMGN2P05204 90 aaKnown RBP12.54□□□□□ -0.4
PRPF39-202ENST00000424478 SLC35E2P0CK97 266 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 HPS6Q86YV9 775 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 SLC15A3Q8IY34 581 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 DPP10Q8N608 796 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 OR52R1Q8NGF1 315 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 ANKRD27Q96NW4 1050 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 BTBD10Q9BSF8 475 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 TGIF2Q9GZN2 237 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 VPS4AQ9UN37 437 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 FARSAQ9Y285 508 aaKnown RBP12.54□□□□□ -0.4
PRPF39-202ENST00000424478 MAN2B2Q9Y2E5 1009 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 HS3ST3B1Q9Y662 390 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 CLCA3PQ9Y6N3 262 aa12.54□□□□□ -0.4
PRPF39-202ENST00000424478 BBIP1A8MTZ0 92 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 TBX19O60806 448 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 ATP1B1P05026 303 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 PRKAR1AP10644 381 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 CRATP43155 626 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 GSTM5P46439 218 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 STT3AP46977 705 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 RFX3P48380 749 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 CORO7P57737 925 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 CEBPEQ15744 281 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 VWA5B2Q8N398 1253 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 ESX1Q8N693 406 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 UTP4Q969X6 686 aaKnown RBP12.53□□□□□ -0.4
PRPF39-202ENST00000424478 EGFL7Q9UHF1 273 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 PRORSD1PA6NEY8 169 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 CBX7O95931 251 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 LIFP15018 202 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 FOLR3P41439 243 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 CEACAM7Q14002 265 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 TMEM64Q6YI46 380 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 C6orf120Q7Z4R8 191 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 NUP43Q8NFH3 380 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 OR2Y1Q8NGV0 311 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 ZFP90Q8TF47 636 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 METTL21AQ8WXB1 218 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 TMEM125Q96AQ2 219 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 SENP5Q96HI0 755 aaPredicted RBP12.53□□□□□ -0.4
PRPF39-202ENST00000424478 LMF1Q96S06 567 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 GPATCH1Q9BRR8 931 aaKnown RBP12.53□□□□□ -0.4
PRPF39-202ENST00000424478 PCDHAC1Q9H158 963 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 ACSS1Q9NUB1 689 aaPredicted RBP12.53□□□□□ -0.4
PRPF39-202ENST00000424478 DNAJA2O60884 412 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 S1PR1P21453 382 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 PTPN4P29074 926 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 RUNDC3AQ59EK9 446 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 LRIF1Q5T3J3 769 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 SLC9A6Q92581 669 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 WDR77Q9BQA1 342 aaPredicted RBP12.53□□□□□ -0.4
PRPF39-202ENST00000424478 CPPED1Q9BRF8 314 aaPredicted RBP12.53□□□□□ -0.4
PRPF39-202ENST00000424478 SLC26A1Q9H2B4 701 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 THSD1Q9NS62 852 aa12.53□□□□□ -0.4
PRPF39-202ENST00000424478 NBEAQ8NFP9 2946 aa12.52□□□□□ -0.4
PRPF39-202ENST00000424478 TLX3O43711 291 aaPredicted RBP12.52□□□□□ -0.41
PRPF39-202ENST00000424478 NCK1P16333 377 aa12.52□□□□□ -0.41
PRPF39-202ENST00000424478 AQP1P29972 269 aa12.52□□□□□ -0.41
PRPF39-202ENST00000424478 RPS15P62841 145 aaKnown RBP12.52□□□□□ -0.41
PRPF39-202ENST00000424478 IGLV3-21P80748 117 aaPredicted RBP12.52□□□□□ -0.41
PRPF39-202ENST00000424478 PAPD4Q6PIY7 484 aaKnown RBP12.52□□□□□ -0.41
PRPF39-202ENST00000424478 KIRREL2Q6UWL6 708 aa12.52□□□□□ -0.41
PRPF39-202ENST00000424478 DTX1Q86Y01 620 aa12.52□□□□□ -0.41
PRPF39-202ENST00000424478 HORMAD2Q8N7B1 307 aa12.52□□□□□ -0.41
PRPF39-202ENST00000424478 SLC16A11Q8NCK7 471 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms