RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ADGRF3Q8IZF5 1079 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 ANKRD53Q8N9V6 530 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 APH1BQ8WW43 257 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 S100ZQ8WXG8 99 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 VMP1Q96GC9 406 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 C1QTNF7Q9BXJ2 289 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 DDX31Q9H8H2 851 aaKnown RBP13.99□□□□□ -0.17
USP4-203ENST00000415188 PREBQ9HCU5 417 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 CUEDC1Q9NWM3 386 aaPredicted RBP13.99□□□□□ -0.17
USP4-203ENST00000415188 FKBP14Q9NWM8 211 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 EHD3Q9NZN3 535 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 FTSJ1Q9UET6 329 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 PSORS1C1Q9UIG5 152 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 KCND3Q9UK17 655 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 PRKAB1Q9Y478 270 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 DOCK9Q9BZ29 2069 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 PTPRBP23467 1997 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 TRBC2A0A5B9 178 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 OR2A25A4D2G3 310 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 CLDN24A6NM45 220 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 SLC31A1O15431 190 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 KDM1AO60341 852 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 EPHA2P29317 976 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 EPHA8P29322 1005 aaPredicted RBP13.99□□□□□ -0.17
USP4-203ENST00000415188 PKLRP30613 574 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 RAB28P51157 221 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 CLCNKAP51800 687 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 MAPK10P53779 464 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 ABATP80404 500 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 ZNF846Q147U1 533 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 SPCS2Q15005 226 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 IRF4Q15306 451 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 INAVAQ3KP66 663 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 CEACAM20Q6UY09 585 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 TMPRSS7Q7RTY8 843 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 EID2Q8N6I1 236 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 LMNTD1Q8N9Z9 388 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 DRAXINQ8NBI3 349 aaPredicted RBP13.99□□□□□ -0.17
USP4-203ENST00000415188 OR2L8Q8NGY9 312 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 OR5AK3PQ8NH89 298 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 RHOXF1Q8NHV9 184 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 PLEKHA8Q96JA3 519 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 F2RL3Q96RI0 385 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 ACAT2Q9BWD1 397 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 FAIM2Q9BWQ8 316 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 WDR12Q9GZL7 423 aaKnown RBP13.99□□□□□ -0.17
USP4-203ENST00000415188 MVB12BQ9H7P6 319 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 FZD3Q9NPG1 666 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 ACER3Q9NUN7 267 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 PRAMEF33A0A0G2JMD5 474 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 A0A1W2PQU0 124 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 TMEM247A6NEH6 219 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 PRAMEF10O60809 474 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 GADD45GO95257 159 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 OXSR1O95747 527 aaPredicted RBP13.98□□□□□ -0.17
USP4-203ENST00000415188 CBLP22681 906 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 PSMB9P28065 219 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 MAP2K4P45985 399 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 ANXA11P50995 505 aaKnown RBP13.98□□□□□ -0.17
USP4-203ENST00000415188 BMXP51813 675 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 SMIM11AP58511 58 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 RPS21P63220 83 aaKnown RBP13.98□□□□□ -0.17
USP4-203ENST00000415188 CSNK1G2P78368 415 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 PRDX1Q06830 199 aaKnown RBP13.98□□□□□ -0.17
USP4-203ENST00000415188 DGUOKQ16854 277 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 DHRS13Q6UX07 377 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 DNAJC22Q8N4W6 341 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 TBC1D19Q8N5T2 526 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 TP53I13Q8NBR0 393 aaPredicted RBP13.98□□□□□ -0.17
USP4-203ENST00000415188 KCNC2Q96PR1 638 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 FERD3LQ96RJ6 166 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 ZNF607Q96SK3 696 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 COPS4Q9BT78 406 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 SORBS1Q9BX66 1292 aaKnown RBP13.98□□□□□ -0.17
USP4-203ENST00000415188 LGR4Q9BXB1 951 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 C1QTNF2Q9BXJ5 285 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 FAIMQ9NVQ4 179 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 GALNT8Q9NY28 637 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 ZFR2Q9UPR6 939 aaKnown RBP13.98□□□□□ -0.17
USP4-203ENST00000415188 SNX8Q9Y5X2 465 aa13.98□□□□□ -0.17
USP4-203ENST00000415188 PKD1L2Q7Z442 2459 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 A0A0A6YYD5 115 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 SH3D21A4FU49 640 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 PRAMEF25A6NGN4 478 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 CLCA1A8K7I4 914 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 PRAMEF26H0Y7S4 382 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 H7BY64 318 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 M0R3G1 203 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 OR1F1O43749 312 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 PFDN1O60925 122 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 SDC3O75056 442 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 GUCY1B2O75343 617 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 FADS2O95864 444 aaKnown RBP13.97□□□□□ -0.17
USP4-203ENST00000415188 ADAP00813 363 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 CDK1P06493 297 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 NUDT1P36639 197 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 ARRB1P49407 418 aaPredicted RBP13.97□□□□□ -0.17
USP4-203ENST00000415188 CLDN6P56747 220 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 CYP4F2P78329 520 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 SPDYE7PQ495Y7 208 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms