RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ATXN8OSP0DMR3 200 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 TCN2P20062 427 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 MC3RP41968 323 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 SLC7A2P52569 658 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 MVDP53602 400 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 EEFSECP57772 596 aaKnown RBP13.31□□□□□ -0.28
SF3B1-204ENST00000414963 TXNL4AP83876 142 aaKnown RBP13.31□□□□□ -0.28
SF3B1-204ENST00000414963 FUT7Q11130 342 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 SPDYE7PQ495Y7 208 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 RABL3Q5HYI8 236 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 SAMD4BQ5PRF9 694 aaKnown RBP13.31□□□□□ -0.28
SF3B1-204ENST00000414963 PGM2L1Q6PCE3 622 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 FAM111BQ6SJ93 734 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 TMEM107Q6UX40 140 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 BNC2Q6ZN30 1099 aaPredicted RBP13.31□□□□□ -0.28
SF3B1-204ENST00000414963 SHISA6Q6ZSJ9 500 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 C6orf120Q7Z4R8 191 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 TMEM151BQ8IW70 566 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 GALNT12Q8IXK2 581 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 VWA5B2Q8N398 1253 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 ENDOVQ8N8Q3 282 aaKnown RBP13.31□□□□□ -0.28
SF3B1-204ENST00000414963 OR7G2Q8NG99 324 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 OR52N2Q8NGI0 321 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 MIPOL1Q8TD10 442 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 METTL21AQ8WXB1 218 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 KAT2AQ92830 837 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 NKD1Q969G9 470 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 AURKBQ96GD4 344 aaPredicted RBP13.31□□□□□ -0.28
SF3B1-204ENST00000414963 RAD21L1Q9H4I0 556 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 IKZF5Q9H5V7 419 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 KAT8Q9H7Z6 458 aaKnown RBP13.31□□□□□ -0.28
SF3B1-204ENST00000414963 THSD1Q9NS62 852 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 CD300AQ9UGN4 299 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 TCFL5Q9UL49 500 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 PPIEQ9UNP9 301 aaKnown RBP13.31□□□□□ -0.28
SF3B1-204ENST00000414963 PTRH2Q9Y3E5 179 aaKnown RBP13.31□□□□□ -0.28
SF3B1-204ENST00000414963 L3MBTL1Q9Y468 752 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 PCDHGA6Q9Y5G7 932 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 CFAP54Q96N23 3096 aa13.31□□□□□ -0.28
SF3B1-204ENST00000414963 TRABD2BA6NFA1 517 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 NME4O00746 187 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 DYRK3O43781 588 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 BRINP1O60477 761 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 BCAS2O75934 225 aaPredicted RBP13.3□□□□□ -0.28
SF3B1-204ENST00000414963 CT62P0C5K7 136 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 TNNI3P19429 210 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 PTGER1P34995 402 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 SOAT1P35610 550 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 CHI3L1P36222 383 aaPredicted RBP13.3□□□□□ -0.28
SF3B1-204ENST00000414963 PGM1P36871 562 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 FOLR3P41439 243 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 GZMMP51124 257 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 FOXL2P58012 376 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 OR4D2P58180 307 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 MTPNP58546 118 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 RPS15P62841 145 aaKnown RBP13.3□□□□□ -0.28
SF3B1-204ENST00000414963 DNASE1L3Q13609 305 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 SELPLGQ14242 412 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 RGNQ15493 299 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 TRMT12Q53H54 448 aaKnown RBP13.3□□□□□ -0.28
SF3B1-204ENST00000414963 PIGGQ5H8A4 983 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 SERPINA11Q86U17 422 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 CALHM3Q86XJ0 350 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 CLEC4FQ8N1N0 589 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 KIF2BQ8N4N8 673 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 OR7G1Q8NGA0 311 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 OR14A16Q8NHC5 309 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 DAZLQ92904 295 aaKnown RBP13.3□□□□□ -0.28
SF3B1-204ENST00000414963 NXPE2Q96DL1 559 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 SENP5Q96HI0 755 aaPredicted RBP13.3□□□□□ -0.28
SF3B1-204ENST00000414963 FBXL20Q96IG2 436 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 THTPAQ9BU02 230 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 THUMPD3Q9BV44 507 aaKnown RBP13.3□□□□□ -0.28
SF3B1-204ENST00000414963 PNO1Q9NRX1 252 aaKnown RBP13.3□□□□□ -0.28
SF3B1-204ENST00000414963 ZCCHC3Q9NUD5 404 aaKnown RBP13.3□□□□□ -0.28
SF3B1-204ENST00000414963 GPATCH2Q9NW75 528 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 C19orf25Q9UFG5 118 aaPredicted RBP13.3□□□□□ -0.28
SF3B1-204ENST00000414963 CROCCQ5TZA2 2017 aa13.3□□□□□ -0.28
SF3B1-204ENST00000414963 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 PRORSD1PA6NEY8 169 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 C17orf105B2RV13 164 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 DDAH2O95865 285 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 CBX7O95931 251 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 C1QCP02747 245 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 IGKV3-11P04433 115 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 BMP2P12643 396 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 HSD17B1P14061 328 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 MMP11P24347 488 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 MRPS35P82673 323 aaKnown RBP13.29□□□□□ -0.28
SF3B1-204ENST00000414963 FOXC1Q12948 553 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 FADDQ13158 208 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 CEACAM7Q14002 265 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 ZNF267Q14586 743 aaPredicted RBP13.29□□□□□ -0.28
SF3B1-204ENST00000414963 SSPNQ14714 243 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 EXOSC6Q5RKV6 272 aaKnown RBP13.29□□□□□ -0.28
SF3B1-204ENST00000414963 C6orf163Q5TEZ5 329 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 ZCCHC12Q6PEW1 402 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 LANCL3Q6ZV70 420 aa13.29□□□□□ -0.28
SF3B1-204ENST00000414963 CPEB2Q7Z5Q1 589 aaKnown RBP13.29□□□□□ -0.28
SF3B1-204ENST00000414963 NET1Q7Z628 596 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms