RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SPACA7Q96KW9 195 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 SECISBP2Q96T21 854 aaKnown RBP17.58■□□□□ 0.41
USP48-204ENST00000400301 RSPH9Q9H1X1 276 aaPredicted RBP17.58■□□□□ 0.41
USP48-204ENST00000400301 CXorf36Q9H7Y0 433 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 PCDHGB6Q9Y5F9 930 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 PRAMEF33A0A0G2JMD5 474 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 SLC35F4A4IF30 521 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 PRAMEF10O60809 474 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 BMP8BP34820 402 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 SLC3A1Q07837 685 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 MINDY4Q4G0A6 757 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 SYT6Q5T7P8 510 aaPredicted RBP17.58■□□□□ 0.4
USP48-204ENST00000400301 ANKRD33Q7Z3H0 272 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 BMP8AQ7Z5Y6 402 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 ADIPOR2Q86V24 386 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 ZNF354BQ96LW1 612 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 SLC17A9Q9BYT1 436 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 PSORS1C1Q9UIG5 152 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 STUB1Q9UNE7 303 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 MED31Q9Y3C7 131 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 PMF1-BGLAPU3KQ54 211 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 ORC5O43913 435 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 GMFGO60234 142 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 GPR4P46093 362 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 SIM1P81133 766 aaPredicted RBP17.58■□□□□ 0.4
USP48-204ENST00000400301 MLIPQ5VWP3 458 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 TMC8Q8IU68 726 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 SYNPOQ8N3V7 929 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 CHPT1Q8WUD6 406 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 SLC38A5Q8WUX1 472 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 VNN3Q9NY84 501 aa17.58■□□□□ 0.4
USP48-204ENST00000400301 AGAP5A6NIR3 686 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 K7ESM1 405 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 BMP4P12644 408 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 GCGRP47871 477 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 GP2P55259 537 aaKnown RBP17.57■□□□□ 0.4
USP48-204ENST00000400301 USP51Q70EK9 711 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 PHOX2BQ99453 314 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 VN1R3Q9BXE9 311 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 SFXN1Q9H9B4 322 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 TMEM184CQ9NVA4 438 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 IL20RAQ9UHF4 553 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 ING4Q9UNL4 249 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 RLFQ13129 1914 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 SCN2BO60939 215 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 UPK1BO75841 260 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 ETHE1O95571 254 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 GASTP01350 101 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 C5AR1P21730 350 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 MTNR1AP48039 350 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 ASB18Q6ZVZ8 466 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 RHOXF1Q8NHV9 184 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 RACGAP1Q9H0H5 632 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 MCUBQ9NWR8 336 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 TRBV4-1A0A0J9YWV2 114 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 FAM227AF5H4B4 570 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 SLC25A12O75746 678 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 C4BPBP20851 252 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 CERS1P27544 350 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 CA5AP35218 305 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 BNC1Q01954 994 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 EIF2B5Q13144 721 aaKnown RBP17.57■□□□□ 0.4
USP48-204ENST00000400301 SLC14A1Q13336 389 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 SREK1IP1Q8N9Q2 155 aaPredicted RBP17.57■□□□□ 0.4
USP48-204ENST00000400301 FAM46AQ96IP4 442 aaKnown RBP17.57■□□□□ 0.4
USP48-204ENST00000400301 C19orf43Q9BQ61 176 aa17.57■□□□□ 0.4
USP48-204ENST00000400301 MRPL39Q9NYK5 338 aaKnown RBP17.57■□□□□ 0.4
USP48-204ENST00000400301 NDRG2Q9UN36 371 aaKnown RBP17.57■□□□□ 0.4
USP48-204ENST00000400301 A0A0G2JPF8 293 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 A8MV72 311 aaPredicted RBP17.56■□□□□ 0.4
USP48-204ENST00000400301 HNRNPCL3B7ZW38 293 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 HNRNPCL4P0DMR1 293 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 ALAS2P22557 587 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 SNAP47Q5SQN1 464 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 FRRS1Q6ZNA5 592 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 OAFQ86UD1 273 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 PJA1Q8NG27 643 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 OR2T33Q8NG76 320 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 TREX2Q9BQ50 279 aaPredicted RBP17.56■□□□□ 0.4
USP48-204ENST00000400301 SACM1LQ9NTJ5 587 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 J3QLW9 94 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 PTHP01270 115 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 ADORA3P0DMS8 318 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 ZNF19P17023 458 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 ACVR2AP27037 513 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 KIAA0040Q15053 153 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 LRRC25Q8N386 305 aaPredicted RBP17.56■□□□□ 0.4
USP48-204ENST00000400301 ACOT4Q8N9L9 421 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 FGF13Q92913 245 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 NELL2Q99435 816 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 TRIM36Q9NQ86 728 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 TAS2R16Q9NYV7 291 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 CNIH4Q9P003 139 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 EPHA2P29317 976 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 CCR2P41597 374 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 STAT5AP42229 794 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 WSCD2Q2TBF2 565 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 ASTLQ6HA08 431 aaPredicted RBP17.56■□□□□ 0.4
USP48-204ENST00000400301 ZNF765Q7L2R6 523 aa17.56■□□□□ 0.4
USP48-204ENST00000400301 CHMP1BQ7LBR1 199 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms