RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 KHKP50053 298 aa15.31■□□□□ 0.04
PCDH1-203ENST00000394536 BTBD16Q32M84 506 aa15.31■□□□□ 0.04
PCDH1-203ENST00000394536 KHDRBS2Q5VWX1 349 aaKnown RBP15.31■□□□□ 0.04
PCDH1-203ENST00000394536 LINC00299Q6ZSB3 139 aa15.31■□□□□ 0.04
PCDH1-203ENST00000394536 DCUN1D3Q8IWE4 304 aa15.31■□□□□ 0.04
PCDH1-203ENST00000394536 ASB15Q8WXK1 588 aa15.31■□□□□ 0.04
PCDH1-203ENST00000394536 RELTQ969Z4 430 aa15.31■□□□□ 0.04
PCDH1-203ENST00000394536 EGLN3Q9H6Z9 239 aa15.31■□□□□ 0.04
PCDH1-203ENST00000394536 MCUBQ9NWR8 336 aa15.31■□□□□ 0.04
PCDH1-203ENST00000394536 CSNK1G3Q9Y6M4 447 aa15.31■□□□□ 0.04
PCDH1-203ENST00000394536 FAM183AA6NL82 134 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 INMT-MINDY4F8WBC2 141 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 AKAP8O43823 692 aaKnown RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 PRKRAO75569 313 aaKnown RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 SLCO2B1O94956 709 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 C6P13671 934 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CST5P28325 142 aaPredicted RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 DEFB103AP81534 67 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 STX4Q12846 297 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 DEFB115Q30KQ5 88 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 NXNL2Q5VZ03 156 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CADM2Q8N3J6 435 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 KLHL36Q8N4N3 616 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 GRPEL2Q8TAA5 225 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 ALG14Q96F25 216 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CNOT2Q9NZN8 540 aaKnown RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CXXC1Q9P0U4 656 aaPredicted RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 EXTL2Q9UBQ6 330 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 K7ESM1 405 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CHST10O43529 356 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 ADH1CP00326 375 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CSNK2A2P19784 350 aaPredicted RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 LARS2Q15031 903 aaKnown RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CDH24Q86UP0 819 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 SLC7A13Q8TCU3 470 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 PITX2Q99697 317 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CPEB1Q9BZB8 566 aaKnown RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CSO75390 466 aaKnown RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 RHOP08100 348 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 GZMMP51124 257 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 PSRC1Q6PGN9 363 aaPredicted RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CNIH2Q6PI25 160 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 PARS2Q7L3T8 475 aaKnown RBP15.3■□□□□ 0.04
PCDH1-203ENST00000394536 KCT2Q8NC54 265 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 POF1BQ8WVV4 589 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CXorf40BQ96DE9 158 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 CTRCQ99895 268 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 IFT27Q9BW83 186 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 GABARAPL3Q9BY60 117 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 GRIP1Q9Y3R0 1128 aa15.3■□□□□ 0.04
PCDH1-203ENST00000394536 DCDC1P59894 354 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 SLAMF1Q13291 335 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 MPP7Q5T2T1 576 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 NDUFAF5Q5TEU4 345 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 OR4F15Q8NGB8 312 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 MCHR1Q99705 422 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 DPH7Q9BTV6 452 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 C1GALT1Q9NS00 363 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 PSME4Q14997 1843 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 PTPN6P29350 595 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 MPIP34949 423 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 RPL4P36578 427 aaKnown RBP15.29■□□□□ 0.04
PCDH1-203ENST00000394536 HTR2BP41595 481 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 LRRC32Q14392 662 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 SUZ12Q15022 739 aaKnown RBP15.29■□□□□ 0.04
PCDH1-203ENST00000394536 SLC36A4Q6YBV0 504 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 PDZD3Q86UT5 571 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 LRRTM4Q86VH4 590 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 SAMD12Q8N8I0 201 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 CAPNS2Q96L46 248 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 PSD2Q9BQI7 771 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 SPNS1Q9H2V7 528 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 MRPS30Q9NP92 439 aaKnown RBP15.29■□□□□ 0.04
PCDH1-203ENST00000394536 QPCTLQ9NXS2 382 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 IRGMA1A4Y4 181 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 J3QLW9 94 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 SCN2BO60939 215 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 ZNF19P17023 458 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 WNT4P56705 351 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 BAK1Q16611 211 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 ZXDCQ2QGD7 858 aaPredicted RBP15.29■□□□□ 0.04
PCDH1-203ENST00000394536 SLC9B2Q86UD5 537 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 OR4N5Q8IXE1 308 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 OR8H3Q8N146 312 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 SLC39A11Q8N1S5 342 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 C17orf50Q8WW18 174 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 RNF121Q9H920 327 aa15.29■□□□□ 0.04
PCDH1-203ENST00000394536 KCNE1BA0A087WTH5 132 aa15.28■□□□□ 0.04
PCDH1-203ENST00000394536 LOC102723532A0A0G2JNH3 316 aa15.28■□□□□ 0.04
PCDH1-203ENST00000394536 HPGDSO60760 199 aa15.28■□□□□ 0.04
PCDH1-203ENST00000394536 NOS1APO75052 506 aaPredicted RBP15.28■□□□□ 0.04
PCDH1-203ENST00000394536 STX11O75558 287 aa15.28■□□□□ 0.04
PCDH1-203ENST00000394536 HMGN2P05204 90 aaKnown RBP15.28■□□□□ 0.04
PCDH1-203ENST00000394536 CSF2RAP15509 400 aa15.28■□□□□ 0.04
PCDH1-203ENST00000394536 SYN1P17600 705 aa15.28■□□□□ 0.04
PCDH1-203ENST00000394536 VIPR2P41587 438 aa15.28■□□□□ 0.04
PCDH1-203ENST00000394536 XCR1P46094 333 aa15.28■□□□□ 0.04
PCDH1-203ENST00000394536 CCR4P51679 360 aa15.28■□□□□ 0.04
PCDH1-203ENST00000394536 WDR5P61964 334 aaKnown RBP15.28■□□□□ 0.04
PCDH1-203ENST00000394536 BNC1Q01954 994 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms