RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 B3GALT1Q9Y5Z6 326 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 PRAF2O60831 178 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 APODP05090 189 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ADRB3P13945 408 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 GIFP27352 417 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 APOFQ13790 326 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 PEA15Q15121 130 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 LRFN4Q6PJG9 635 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 IQCF1Q8N6M8 205 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 NINJ1Q92982 152 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 FAM46BQ96A09 425 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF514Q96K75 400 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 CMKLR1Q99788 373 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 TGIF2Q9GZN2 237 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 TCEAL2Q9H3H9 227 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 PLAGL1Q9UM63 463 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 RHOP08100 348 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 PRKAR1BP31321 381 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 PTPRRQ15256 657 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF585AQ6P3V2 769 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 KCTD18Q6PI47 426 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 SLC5A8Q8N695 610 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF283Q8N7M2 679 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 BBS10Q8TAM1 723 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 SAMD10Q9BYL1 202 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 SRA1Q9HD15 236 aaKnown RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 CARNS1A5YM72 827 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 TTLL8A6PVC2 850 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 GP1BBP13224 206 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 CD1DP15813 335 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 NR0B1P51843 470 aaKnown RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 POU4F2Q12837 409 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 KIAA1211LQ6NV74 962 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 ZER1Q7Z7L7 766 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 SLC22A17Q8WUG5 538 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 SORCS1Q8WY21 1168 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 CDC6Q99741 560 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 RXFP3Q9NSD7 469 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 TECPR2O15040 1411 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 TNFRSF10AO00220 468 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 ACP5P13686 325 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 VSX2P58304 361 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 SGCBQ16585 318 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 SLC29A4Q7RTT9 530 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 CPA6Q8N4T0 437 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF597Q96LX8 424 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 HEBP1Q9NRV9 189 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 GLTPQ9NZD2 209 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 MYEF2Q9P2K5 600 aaKnown RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 ERVW-1Q9UQF0 538 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 NUMA1Q14980 2115 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 UBBP0CG47 229 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 UBCP0CG48 685 aaKnown RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 UGT2B7P16662 529 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 TNFRSF1BP20333 461 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 TAGLNQ01995 201 aaKnown RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 ARSIQ5FYB1 569 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 BEX5Q5H9J7 111 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 ALKAL2Q6UX46 152 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 TRIM46Q7Z4K8 759 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 CCDC116Q8IYX3 515 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 OR5M3Q8NGP4 307 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 OR4Q3Q8NH05 313 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 SLC38A3Q99624 504 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 BRF2Q9HAW0 419 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 REV1Q9UBZ9 1251 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 ERCC6L2Q5T890 1561 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 LOC285095A0A1B0GVY8 99 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 SLC38A8A6NNN8 435 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 MT-ND4P03905 459 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 CTSOP43234 321 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 RPL13AP3Q6NVV1 102 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 FIP1L1Q6UN15 594 aaKnown RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 MS4A15Q8N5U1 240 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 OR5H2Q8NGV7 314 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 NETO1Q8TDF5 533 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 RRNAD1Q96FB5 475 aaKnown RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 WDR77Q9BQA1 342 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 TMEM121BQ9BXQ6 578 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-202ENST00000394243 POPDC3Q9HBV1 291 aa11.33□□□□□ -0.6
SYNPO-202ENST00000394243 RFXAPO00287 272 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 TOR1AO14656 332 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 SLC35E2BP0CK96 405 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 OXTRP30559 389 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 MEF2AQ02078 507 aaPredicted RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 GALNT2Q10471 571 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 CERS5Q8N5B7 392 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 TEX26Q8N6G2 289 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 DNAJA3Q96EY1 480 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 FAM46AQ96IP4 442 aaKnown RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 NTPCRQ9BSD7 190 aaKnown RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 A6NIN4 97 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 TNFSF8P32971 234 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 WNT4P56705 351 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 EMX1Q04741 257 aaPredicted RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 FBXL22Q6P050 247 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 PLBD1Q6P4A8 553 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 OR6N1Q8NGY5 312 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 HAS2Q92819 552 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 CNN2Q99439 309 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms