RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NXPE1Q8N323 547 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GPRC5AQ8NFJ5 357 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 OR6M1Q8NGM8 313 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 OR8K5Q8NH50 307 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 NEIL3Q8TAT5 605 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SKA2Q8WVK7 121 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 ASB11Q8WXH4 323 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 MS4A4AQ96JQ5 239 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 FUZQ9BT04 418 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 THAP7Q9BT49 309 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 RBCK1Q9BYM8 510 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GSX2Q9BZM3 304 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SHARPINQ9H0F6 387 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 C11orf49Q9H6J7 331 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 MVB12BQ9H7P6 319 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 DLL4Q9NR61 685 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 PTTG3PQ9NZH4 202 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 MGAT4BQ9UQ53 548 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 FCF1Q9Y324 198 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 ASB4Q9Y574 426 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 STON1Q9Y6Q2 735 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ZNF106Q9H2Y7 1883 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 MFSD2BA6NFX1 497 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 CD8B2A6NJW9 211 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GABRPO00591 440 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GPR171O14626 319 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 KPNA5O15131 536 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 NUPL2O15504 423 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 HRO43593 1189 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GBAP04062 536 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 EIF4EP06730 217 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 OR56A5P0C7T3 313 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 CBSLP0DN79 551 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 CD8BP10966 210 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 NAT2P11245 290 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 CBSP35520 551 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ASMTP46597 345 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 DCDC1P59894 354 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ZP1P60852 638 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 MBTPS1Q14703 1052 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 NTRK2Q16620 822 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 CDKN3Q16667 212 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ST3GAL2Q16842 350 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ZNF630Q2M218 657 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 ARMC12Q5T9G4 340 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 RNF219Q5W0B1 726 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 CXorf57Q6NSI4 855 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 C16orf59Q7L2K0 433 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 TECPR1Q7Z6L1 1165 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 TLK2Q86UE8 772 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 LINC00518Q8N0U6 118 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 OR8D4Q8NGM9 314 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 NPLOC4Q8TAT6 608 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SLC7A13Q8TCU3 470 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 RFT1Q96AA3 541 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 RNFT2Q96EX2 444 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 MYO19Q96H55 970 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GPA33Q99795 319 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ARHGAP9Q9BRR9 750 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 TMEM175Q9BSA9 504 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 CLEC4MQ9H2X3 399 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 TBC1D17Q9HA65 648 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ZFYVE1Q9HBF4 777 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 MCCC2Q9HCC0 563 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 FGF20Q9NP95 211 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 IMP3Q9NV31 184 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 LYARQ9NX58 379 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 CACNG2Q9Y698 323 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 MEIKINA0A087WXM9 373 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 TEX13CA0A0J9YWL9 993 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GNG14A0A1W2PPG7 69 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 PIPSLA2A3N6 862 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 MGAT4DA6NG13 374 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 K7ERQ8 282 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 EEF1E1O43324 174 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 SLC19A2O60779 497 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 DHFRP00374 187 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 IFNA16P05015 189 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 KELP23276 732 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 DNASE1P24855 282 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 HLA-FP30511 346 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 HOXC8P31273 242 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 TIA1P31483 386 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS39-202ENST00000348544 GKP32189 559 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GJA5P36382 358 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 HNMTP50135 292 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 B2MP61769 119 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 RPL6Q02878 288 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 ZNF155Q12901 538 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 GINS1Q14691 196 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SLC36A2Q495M3 483 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SLC25A30Q5SVS4 291 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 DCST1Q5T197 706 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 TFAP2EQ6VUC0 442 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GET4Q7L5D6 327 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 TSPAN33Q86UF1 283 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 LHFPL3Q86UP9 236 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 COMTD1Q86VU5 262 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GPR135Q8IZ08 494 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ZNF687Q8N1G0 1237 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms