RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SYN3O14994 580 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 HTR1AP08908 422 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 SLC10A3P09131 477 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 TACSTD2P09758 323 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 GGT1P19440 569 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 AADACL4Q5VUY2 407 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 LCN8Q6JVE9 175 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 ZSCAN1Q8NBB4 408 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 CIDECQ96AQ7 238 aaPredicted RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 DPYSL5Q9BPU6 564 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 GSTO2Q9H4Y5 243 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 NLE1Q9NVX2 485 aaPredicted RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 OR6C2Q9NZP2 312 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 PLIN4Q96Q06 1357 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 RHPN2P1A8MT19 583 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 LEFTY1O75610 366 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 ALDOBP05062 364 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 EDN1P05305 212 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 MSL3P1P0C860 447 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 PFKLP17858 780 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 POLR2CP19387 275 aaPredicted RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 CD9P21926 228 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 IL4RP24394 825 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 MAGEA3P43357 314 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 VAMP2P63027 116 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 GALK2Q01415 458 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 GRIN2CQ14957 1233 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 MFSD13AQ14CX5 517 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 NPAS4Q8IUM7 802 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 METTL25Q8N6Q8 603 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 CELF2-AS1Q8N7Q2 184 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 FAM83FQ8NEG4 500 aaPredicted RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 DNAJB8Q8NHS0 232 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 TMEM40Q8WWA1 233 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 FCAMRQ8WWV6 532 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 METTL21AQ8WXB1 218 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 FUBP3Q96I24 572 aaKnown RBP eCLIP8.3□□□□□ -1.08
RTN3-202ENST00000339997 TUBA1CQ9BQE3 449 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 ZNF701Q9NV72 531 aaPredicted RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 CDH10Q9Y6N8 788 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 KIF1AQ12756 1690 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 MEIOCA2RUB1 952 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 C2orf78A6NCI8 922 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 LYRM1O43325 122 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 NCR1O76036 304 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 RPS17P08708 135 aaKnown RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 NUDT7P0C024 238 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 TYRP14679 529 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 VSX2P58304 361 aaPredicted RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 IRF5Q13568 498 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 SF3B4Q15427 424 aaKnown RBP eCLIP8.3□□□□□ -1.08
RTN3-202ENST00000339997 CDNFQ49AH0 187 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 MLIPQ5VWP3 458 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 ATG9BQ674R7 924 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 TMEM126BQ8IUX1 230 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 GPALPP1Q8IXQ4 340 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 TEX26Q8N6G2 289 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 MFSD2AQ8NA29 543 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 OR5H6Q8NGV6 325 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 TMEM19Q96HH6 336 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 FOXN4Q96NZ1 517 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 HIST1H2AAQ96QV6 131 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 CMKLR1Q99788 373 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 GPR62Q9BZJ7 368 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 FANCFQ9NPI8 374 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 IGSF5Q9NSI5 407 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 PCTPQ9UKL6 214 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 PCDHGB7Q9Y5F8 929 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 A0A0U1RQF3 1178 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 UPK1BO75841 260 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 SLC16A8O95907 504 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 CSTBP04080 98 aaKnown RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 APODP05090 189 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 ALDOCP09972 364 aaKnown RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 ENDOUP21128 410 aaKnown RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 DCKP27707 260 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 HSD11B1P28845 292 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 MTNR1AP48039 350 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 TGM4P49221 684 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 SSTP61278 116 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 ERVK-21P61565 698 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 SIM1P81133 766 aaPredicted RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 TRAM2Q15035 370 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 SOWAHCQ53LP3 525 aaPredicted RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 FAM219BQ5XKK7 198 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 C15orf39Q6ZRI6 1047 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 BEST3Q8N1M1 668 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 OR8K5Q8NH50 307 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 FANK1Q8TC84 345 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 PLD4Q96BZ4 506 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 SUSD3Q96L08 255 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 TUBB1Q9H4B7 451 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 MCCC2Q9HCC0 563 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 SDR39U1Q9NRG7 319 aaPredicted RBP8.3□□□□□ -1.08
RTN3-202ENST00000339997 MAN2C1Q9NTJ4 1040 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 MTMR10Q9NXD2 777 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 STYXL1Q9Y6J8 313 aa8.3□□□□□ -1.08
RTN3-202ENST00000339997 PIRO00625 290 aa8.29□□□□□ -1.08
RTN3-202ENST00000339997 COCHO43405 550 aa8.29□□□□□ -1.08
RTN3-202ENST00000339997 KAT7O95251 611 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms