RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CST11Q9H112 138 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 GPR52Q9Y2T5 361 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 HEBP2Q9Y5Z4 205 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 CACNG2Q9Y698 323 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 TBC1D3DA0A087WVF3 549 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 TBC1D3IA0A087WXS9 549 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 TBC1D3EA0A087X179 549 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 TBC1D3KA0A087X1G2 549 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 TBC1D3FA6NER0 549 aaPredicted RBP18.39■□□□□ 0.53
USP48-201ENST00000308271 TBC1D3LB9A6J9 549 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 K7ERQ8 282 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 TBC1D3HP0C7X1 549 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 ZNF91Q05481 1191 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 TMEM69Q5SWH9 247 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 TBC1D3GQ6DHY5 549 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 TBC1D3CQ6IPX1 549 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 HAGHLQ6PII5 290 aaPredicted RBP18.39■□□□□ 0.53
USP48-201ENST00000308271 MRPL10Q7Z7H8 261 aaKnown RBP18.39■□□□□ 0.53
USP48-201ENST00000308271 TBC1D3Q8IZP1 549 aaPredicted RBP18.39■□□□□ 0.53
USP48-201ENST00000308271 SPERTQ8NA61 448 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.39■□□□□ 0.53
USP48-201ENST00000308271 SOHLH2Q9NX45 425 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 SCP2D1Q9UJQ7 156 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 KIF13AQ9H1H9 1805 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 SCN7AQ01118 1682 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 STK25O00506 426 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 ONECUT3O60422 494 aaPredicted RBP18.39■□□□□ 0.53
USP48-201ENST00000308271 KRT33AO76009 404 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 SOX30O94993 753 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 LATS1O95835 1130 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 SPINT3P49223 89 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 LMLNQ96KR4 655 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 NIPAL2Q9H841 368 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 MEMO1Q9Y316 297 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 EMP3P54852 163 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 SHFQ7M4L6 423 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 C3orf58Q8NDZ4 430 aa18.39■□□□□ 0.53
USP48-201ENST00000308271 LTBP3Q9NS15 1303 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 UNC119BA6NIH7 251 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 H7BY64 318 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 HTR1AP08908 422 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 GNALP38405 381 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 ETV3P41162 512 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 FNTBP49356 437 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 SUOXP51687 545 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 LMAN2Q12907 356 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 UAP1L1Q3KQV9 507 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 TOR1AIP1Q5JTV8 583 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 CCDC116Q8IYX3 515 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 NKD1Q969G9 470 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 ZNF566Q969W8 418 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 PRAP1Q96NZ9 151 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 THAP7Q9BT49 309 aaPredicted RBP18.38■□□□□ 0.53
USP48-201ENST00000308271 ZNF471Q9BX82 626 aaPredicted RBP18.38■□□□□ 0.53
USP48-201ENST00000308271 RBFOX1Q9NWB1 397 aaKnown RBP18.38■□□□□ 0.53
USP48-201ENST00000308271 CFAP20Q9Y6A4 193 aaKnown RBP18.38■□□□□ 0.53
USP48-201ENST00000308271 GLOD5A6NK44 160 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 SLC16A8O95907 504 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 ACVR1BP36896 505 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 MAN2A2P49641 1150 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 RAB2AP61019 212 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 E2F1Q01094 437 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 PIN1Q13526 163 aaPredicted RBP18.38■□□□□ 0.53
USP48-201ENST00000308271 FBXO42Q6P3S6 717 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 LAX1Q8IWV1 398 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 CLDN22Q8N7P3 220 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 SLC22A18Q96BI1 424 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 TCEAL4Q96EI5 215 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 MED30Q96HR3 178 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 SLC39A1Q9NY26 324 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 C1QAP02745 245 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 SCG5P05408 212 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 ACP5P13686 325 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 TACR1P25103 407 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 ZNF551Q7Z340 670 aaPredicted RBP18.38■□□□□ 0.53
USP48-201ENST00000308271 BOLA1Q9Y3E2 137 aa18.38■□□□□ 0.53
USP48-201ENST00000308271 LOC102723532A0A0G2JNH3 316 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 UNCXA6NJT0 531 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 PTPN2P17706 415 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 CHMP24386 653 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 RAB8AP61006 207 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 ARF5P84085 180 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 EFR3AQ14156 821 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 SCGB2B2Q4G0G5 96 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 POMZP3Q6PJE2 187 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 TMEM145Q8NBT3 493 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 SLC39A13Q96H72 371 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 GPR62Q9BZJ7 368 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 ARHGAP39Q9C0H5 1083 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 SRMSQ9H3Y6 488 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 COQ3Q9NZJ6 369 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 PHLPP1O60346 1717 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 TMX2-CTNND1H3BSU7 103 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 PCDHGA12O60330 932 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 CNMDO75829 334 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 DRD2P14416 443 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 RPL34P49207 117 aaKnown RBP18.37■□□□□ 0.53
USP48-201ENST00000308271 POU4F2Q12837 409 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 FAM214AQ32MH5 1076 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 CRTC1Q6UUV9 634 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms