RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 PTPRFP10586 1907 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 CSN2P05814 226 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 HSD11B1P28845 292 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 CHRNA4P43681 627 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 VEGFCP49767 419 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 SEZ6Q53EL9 994 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 CARD16Q5EG05 197 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 C3orf38Q5JPI3 329 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 ZNF529Q6P280 563 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 PODNL1Q6PEZ8 512 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 LAYNQ6UX15 382 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 PDZD3Q86UT5 571 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 CCDC71Q8IV32 467 aaPredicted RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 OR2L5Q8NG80 312 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 HRASLS5Q96KN8 279 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 HSD3B7Q9H2F3 369 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 RIMS4Q9H426 269 aaPredicted RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 ADAMTS5Q9UNA0 930 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 FARSAQ9Y285 508 aaKnown RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 POMT1Q9Y6A1 747 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 TBL1XO60907 577 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 DGKIO75912 1065 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 CAPN3P20807 821 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 HMGCS1Q01581 520 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 RELAQ04206 551 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 ZNF267Q14586 743 aaPredicted RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 C4orf46Q504U0 113 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 NCBP2-AS2Q69YL0 99 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 ADGRA1Q86SQ6 560 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 PROKR1Q8TCW9 393 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 SLC46A1Q96NT5 459 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 SORCS2Q96PQ0 1159 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 CNN2Q99439 309 aaKnown RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 GATA5Q9BWX5 397 aaPredicted RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 ZDHHC5Q9C0B5 715 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 FNDC3AQ9Y2H6 1198 aaKnown RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 PSAT1Q9Y617 370 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 MBLAC1A4D2B0 266 aaPredicted RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 SLC16A6O15403 523 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 FUT4P22083 530 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 PRAMEF14Q5SWL7 426 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 PRAMEF13Q5VWM6 474 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 IQCHQ86VS3 1027 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 HPS6Q86YV9 775 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 SYNPOQ8N3V7 929 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 PHOX2BQ99453 314 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 CNOT6Q9ULM6 557 aaKnown RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 TFR2Q9UP52 801 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 STK25O00506 426 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 ZNF254O75437 659 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 JTBO76095 146 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 SYPP08247 313 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 CYP4B1P13584 511 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 HSPA7P48741 367 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 DNASE1L1P49184 302 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 NOVA1P51513 510 aaKnown RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 MPEG1Q2M385 716 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 UBE2NLQ5JXB2 153 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 C6orf136Q5SQH8 315 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 LSM14AQ8ND56 463 aaKnown RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 MAL2Q969L2 176 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 MRPS24Q96EL2 167 aaKnown RBP3.84□□□□□ -1.79
USH2A-201ENST00000307340 MAN2C1Q9NTJ4 1040 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 B3GAT1Q9P2W7 334 aa3.84□□□□□ -1.79
USH2A-201ENST00000307340 ITM2AO43736 263 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 F10P00742 488 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 IFNA17P01571 189 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 PGCP20142 388 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 PDHA2P29803 388 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 KIAA1024LP59773 190 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 RAB8AP61006 207 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 ZC3H14Q6PJT7 736 aaKnown RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 OR5B12Q96R08 314 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 PINK1Q9BXM7 581 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 FAM198AQ9UFP1 575 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 SPEF1Q9Y4P9 236 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 SCN5AQ14524 2016 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 NFKBIEO00221 500 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 TEAD1P28347 426 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 ZNF613Q6PF04 617 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 CEACAM20Q6UY09 585 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 CYP2R1Q6VVX0 501 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 OR9A2Q8NGT5 310 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 LNX1Q8TBB1 728 aaPredicted RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 TRAPPC12Q8WVT3 735 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 STRADBQ9C0K7 418 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 SOHLH2Q9NX45 425 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 PPM1HQ9ULR3 514 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 RP1L1Q8IWN7 2480 aaPredicted RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 ELOA3DA6NLF2 546 aaPredicted RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 CHRNB2P17787 502 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 CYP4F8P98187 520 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 ST3GAL4Q11206 333 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 SLC10A6Q3KNW5 377 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 ELOA3BQ3SY89 546 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 TECRLQ5HYJ1 363 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 LDB1Q86U70 411 aaPredicted RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 SYT14Q8NB59 555 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 ELOA3Q8NG57 546 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 OR1J4Q8NGS1 313 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms