RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 IL9P15248 144 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 SLC19A1P41440 591 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 CSTF1Q05048 431 aaKnown RBP10.37□□□□□ -0.75
LSM3-201ENST00000306024 ABHD18Q0P651 414 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 RUNDC3AQ59EK9 446 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 TIGD3Q6B0B8 471 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 LIPIQ6XZB0 460 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 LGI4Q8N135 537 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 FAM126AQ9BYI3 521 aaPredicted RBP10.37□□□□□ -0.75
LSM3-201ENST00000306024 IPPKQ9H8X2 491 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 BEX1Q9HBH7 125 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 SLAMF7Q9NQ25 335 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 VNN3Q9NY84 501 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 FBXO10Q9UK96 956 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 DOCK4Q8N1I0 1966 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 CACNB4O00305 520 aaPredicted RBP10.37□□□□□ -0.75
LSM3-201ENST00000306024 ATG13O75143 517 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 APOL3O95236 402 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 ALAS2P22557 587 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 APEX1P27695 318 aaKnown RBP10.37□□□□□ -0.75
LSM3-201ENST00000306024 GSTM5P46439 218 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 ABRQ12979 859 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 CPSF6Q16630 551 aaKnown RBP eCLIP10.37□□□□□ -0.75
LSM3-201ENST00000306024 RFTN2Q52LD8 501 aaPredicted RBP10.37□□□□□ -0.75
LSM3-201ENST00000306024 LAPTM4BQ86VI4 370 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 PLPP6Q8IY26 295 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 C7orf57Q8NEG2 295 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 BOCQ9BWV1 1114 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 SRRQ9GZT4 340 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 FOLH1BQ9HBA9 442 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 KCTD5Q9NXV2 234 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 TNFRSF10DQ9UBN6 386 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 ENOPH1Q9UHY7 261 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 NDRG4Q9ULP0 352 aaKnown RBP10.37□□□□□ -0.75
LSM3-201ENST00000306024 A0A1W2PQU0 124 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 FAM170BA6NMN3 283 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 STX16O14662 325 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 NR2F6P10588 404 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 ICAM2P13598 275 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 LHCGRP22888 699 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 DDX39BQ13838 428 aaKnown RBP10.36□□□□□ -0.75
LSM3-201ENST00000306024 FCN2Q15485 313 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 SAXO2Q658L1 398 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 ZNF782Q6ZMW2 699 aaPredicted RBP10.36□□□□□ -0.75
LSM3-201ENST00000306024 ZBTB2Q8N680 514 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 B3GNT7Q8NFL0 401 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 KIAA1191Q96A73 305 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 COQ10AQ96MF6 247 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 BTBD2Q9BX70 525 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 BRINP2Q9C0B6 783 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 SLC6A17Q9H1V8 727 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 RBFOX1Q9NWB1 397 aaKnown RBP10.36□□□□□ -0.75
LSM3-201ENST00000306024 PHF11Q9UIL8 331 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 A0A0G2JPF8 293 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 A0A1B0GTL3 188 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 HNRNPCL3B7ZW38 293 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 ARNTLO00327 626 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 SLC30A4O14863 429 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 KPNA5O15131 536 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 TSPAN6O43657 245 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 FZD6O60353 706 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 CTSLP07711 333 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 HNRNPCL4P0DMR1 293 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 SRFP11831 508 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 MRPS21P82921 87 aaKnown RBP10.36□□□□□ -0.75
LSM3-201ENST00000306024 SPHARQ15513 63 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 MLF2Q15773 248 aaPredicted RBP10.36□□□□□ -0.75
LSM3-201ENST00000306024 ATG9BQ674R7 924 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 KDM4DQ6B0I6 523 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 TEX261Q6UWH6 196 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 OR2T11Q8NH01 316 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 COQ8AQ8NI60 647 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 KLHL6Q8WZ60 621 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 C11orf24Q96F05 449 aaPredicted RBP10.36□□□□□ -0.75
LSM3-201ENST00000306024 CCDC115Q96NT0 180 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 ARL15Q9NXU5 204 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 COPZ2Q9P299 210 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 HCN2Q9UL51 889 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 TRAPPC4Q9Y296 219 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 TNPO3Q9Y5L0 923 aaKnown RBP10.36□□□□□ -0.75
LSM3-201ENST00000306024 U3KQ87 197 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 ANAPC1Q9H1A4 1944 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 MTCL1Q9Y4B5 1905 aaKnown RBP10.36□□□□□ -0.75
LSM3-201ENST00000306024 ADAMDEC1O15204 470 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 KCNJ13O60928 360 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 CSF3P09919 207 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 PER3P56645 1201 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 ZNF33BQ06732 778 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 LARS2Q15031 903 aaKnown RBP10.36□□□□□ -0.75
LSM3-201ENST00000306024 PTCHD3Q3KNS1 767 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 DPPA4Q7L190 304 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 PIGUQ9H490 435 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 EMC3Q9P0I2 261 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 GMEB2Q9UKD1 530 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 RAB23Q9ULC3 237 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 EDARQ9UNE0 448 aa10.36□□□□□ -0.75
LSM3-201ENST00000306024 SLC28A1O00337 649 aa10.35□□□□□ -0.75
LSM3-201ENST00000306024 PROM1O43490 865 aa10.35□□□□□ -0.75
LSM3-201ENST00000306024 GMDSO60547 372 aa10.35□□□□□ -0.75
LSM3-201ENST00000306024 IFNA14P01570 189 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms