RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 MAN2A2P49641 1150 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 MAPK10P53779 464 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 MGAT2Q10469 447 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 BIKQ13323 160 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 DSG2Q14126 1118 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 LASP1Q14847 261 aaKnown RBP13.22□□□□□ -0.29
SS18-201ENST00000269137 TAF11Q15544 211 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 SYT16Q17RD7 645 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 CYBRD1Q53TN4 286 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 FHL5Q5TD97 284 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 PRR23CQ6ZRP0 262 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 AMIGO2Q86SJ2 522 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 PATL1Q86TB9 770 aaKnown RBP13.22□□□□□ -0.29
SS18-201ENST00000269137 LGI4Q8N135 537 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 METTL27Q8N6F8 245 aaPredicted RBP13.22□□□□□ -0.29
SS18-201ENST00000269137 SUMF1Q8NBK3 374 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 RHBDD1Q8TEB9 315 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 RAB8BQ92930 207 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 CTHRC1Q96CG8 243 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 MS4A4EQ96PG1 132 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 OR1F2PQ96R84 312 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 SYNDIG1Q9H7V2 258 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 PRTFDC1Q9NRG1 225 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 ADPRHL2Q9NX46 363 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 SIDT1Q9NXL6 827 aaKnown RBP13.22□□□□□ -0.29
SS18-201ENST00000269137 CLDN16Q9Y5I7 305 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 A0A1B0GX78 115 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 TMEM247A6NEH6 219 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 C5orf58C9J3I9 102 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 CDX4O14627 284 aaPredicted RBP13.21□□□□□ -0.29
SS18-201ENST00000269137 SUV39H1O43463 412 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 ZNF682O95780 498 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 LDLRP01130 860 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 NT5EP21589 574 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 AQP1P29972 269 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 MAGEA2P43356 314 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 CLCN2P51788 898 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 MRPS35P82673 323 aaKnown RBP13.21□□□□□ -0.29
SS18-201ENST00000269137 ZFP36L1Q07352 338 aaKnown RBP13.21□□□□□ -0.29
SS18-201ENST00000269137 SLC13A2Q13183 592 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 MAPK11Q15759 364 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 LRRC36Q1X8D7 754 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 PRICKLE4Q2TBC4 344 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 CMPK2Q5EBM0 449 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 FKBP9P1Q75LS8 142 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 GALNT10Q86SR1 603 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 KBTBD2Q8IY47 623 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 ST13P4Q8IZP2 240 aaPredicted RBP13.21□□□□□ -0.29
SS18-201ENST00000269137 RCBTB1Q8NDN9 531 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 C16orf58Q96GQ5 468 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 ACTRT3Q9BYD9 372 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 SEMA6AQ9H2E6 1030 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 MAT2BQ9NZL9 334 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 P2RX2Q9UBL9 471 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 DHCR7Q9UBM7 475 aaKnown RBP13.21□□□□□ -0.29
SS18-201ENST00000269137 TRPC4Q9UBN4 977 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 FTSJ1Q9UET6 329 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 NDOR1Q9UHB4 597 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 CNOT11Q9UKZ1 510 aaKnown RBP13.21□□□□□ -0.29
SS18-201ENST00000269137 HCN4Q9Y3Q4 1203 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 MMACHCQ9Y4U1 282 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 MAU2Q9Y6X3 613 aa13.21□□□□□ -0.29
SS18-201ENST00000269137 VGLL3A8MV65 326 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 TMEM229AB2RXF0 380 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 M0QX08 132 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 CLOCKO15516 846 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 DEAF1O75398 565 aaPredicted RBP13.2□□□□□ -0.3
SS18-201ENST00000269137 PRSS23O95084 383 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 SEMG1P04279 462 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 CD59P13987 128 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 OR1D4P47884 311 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 SELENOWP63302 87 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 STX4Q12846 297 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 MAP4K2Q12851 820 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 GRAMD1BQ3KR37 738 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.2□□□□□ -0.3
SS18-201ENST00000269137 PRAMEF17Q5VTA0 474 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 PRAMEF8Q5VWM4 474 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 PRAMEF7Q5VXH5 474 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 RHBDD2Q6NTF9 364 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 MFSD12Q6NUT3 480 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 FAM111BQ6SJ93 734 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 BPHLQ86WA6 291 aaPredicted RBP13.2□□□□□ -0.3
SS18-201ENST00000269137 C7orf57Q8NEG2 295 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 OR5D16Q8NGK9 328 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 XAGE5Q8WWM1 108 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 DNAJC9Q8WXX5 260 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 TAMM41Q96BW9 452 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 TMEM19Q96HH6 336 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 NAF1Q96HR8 494 aaKnown RBP13.2□□□□□ -0.3
SS18-201ENST00000269137 OR6C1Q96RD1 312 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 ZNF184Q99676 751 aaPredicted RBP13.2□□□□□ -0.3
SS18-201ENST00000269137 DOHHQ9BU89 302 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 BDH2Q9BUT1 245 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 ALOXE3Q9BYJ1 711 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 RBCK1Q9BYM8 510 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 ZNF304Q9HCX3 659 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 IL1RAPQ9NPH3 570 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 LANCL2Q9NS86 450 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 RARRES3Q9UL19 164 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms