RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 LRRC3BQ96PB8 259 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 NELL2Q99435 816 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 SPATA5L1Q9BVQ7 753 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 GLIPR2Q9H4G4 154 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 KCNK12Q9HB15 430 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 MYL12AP19105 171 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 SSR2P43308 183 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 HTR3AP46098 478 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 GIPRP48546 466 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 TGM4P49221 684 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 KHKP50053 298 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 ZNF697Q5TEC3 545 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 ZER1Q7Z7L7 766 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 SLC25A46Q96AG3 418 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 ZNF582Q96NG8 517 aaPredicted RBP17.69■□□□□ 0.42
CPSF3-201ENST00000238112 PITHD1Q9GZP4 211 aaPredicted RBP17.69■□□□□ 0.42
CPSF3-201ENST00000238112 NT5DC2Q9H857 520 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 TXNL4BQ9NX01 149 aaKnown RBP17.69■□□□□ 0.42
CPSF3-201ENST00000238112 KIAA0355O15063 1070 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 RCVRNP35243 200 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 BMPR1AP36894 532 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 NCBP2P52298 156 aaKnown RBP eCLIP17.68■□□□□ 0.42
CPSF3-201ENST00000238112 ZNF79Q15937 498 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 NDUFA5Q16718 116 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 ATAT1Q5SQI0 421 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 SLC25A30Q5SVS4 291 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 NDUFAF5Q5TEU4 345 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 OR4C11Q6IEV9 310 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 Q8N9G6 341 aaPredicted RBP17.68■□□□□ 0.42
CPSF3-201ENST00000238112 BBS10Q8TAM1 723 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 OTUB1Q96FW1 271 aaPredicted RBP17.68■□□□□ 0.42
CPSF3-201ENST00000238112 COX14Q96I36 57 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 AMDHD1Q96NU7 426 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 DPH7Q9BTV6 452 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 SRRQ9GZT4 340 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 DDX31Q9H8H2 851 aaKnown RBP17.68■□□□□ 0.42
CPSF3-201ENST00000238112 TM7SF3Q9NS93 570 aa17.68■□□□□ 0.42
CPSF3-201ENST00000238112 SLC35F4A4IF30 521 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 IL1AP01583 271 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 FGBP02675 491 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 PCCBP05166 539 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 EPHX1P07099 455 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 TSPAN19P0C672 248 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 IL7P13232 177 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 NTSP30990 170 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 ETV5P41161 510 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 BUD31P41223 144 aaPredicted RBP17.67■□□□□ 0.42
CPSF3-201ENST00000238112 ETV1P50549 477 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 SMSP52788 366 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 PRKAG1P54619 331 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 TRA2BP62995 288 aaKnown RBP17.67■□□□□ 0.42
CPSF3-201ENST00000238112 GPR50Q13585 617 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 SNAPC1Q16533 368 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 BAK1Q16611 211 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 KLHL22Q53GT1 634 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 KIAA1211LQ6NV74 962 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 ADAMTSL4Q6UY14 1074 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 RTL10Q7L3V2 364 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 OLIG3Q7RTU3 272 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 UBE3DQ7Z6J8 389 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 RAB43Q86YS6 212 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 MMAAQ8IVH4 418 aaKnown RBP17.67■□□□□ 0.42
CPSF3-201ENST00000238112 AMER3Q8N944 861 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 TMEM203Q969S6 136 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 PRRC1Q96M27 445 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 NEDD4LQ96PU5 975 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 RERGLQ9H628 205 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 TAS2R7Q9NYW3 318 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 SPIN1Q9Y657 262 aaPredicted RBP17.67■□□□□ 0.42
CPSF3-201ENST00000238112 PLD2O14939 933 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 TIMP1P01033 207 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 SLC35G4P0C7Q5 338 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 ACADMP11310 421 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 DRD2P14416 443 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 CPEP16870 476 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 SLC6A11P48066 632 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 HNRNPA0Q13151 305 aaKnown RBP17.67■□□□□ 0.42
CPSF3-201ENST00000238112 ZNF362Q5T0B9 420 aaPredicted RBP17.67■□□□□ 0.42
CPSF3-201ENST00000238112 METRNLQ641Q3 311 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 C22orf42Q6IC83 251 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 ACSM5Q6NUN0 579 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 FAM131AQ6UXB0 335 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 HMGN2P46Q86SG4 172 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 LAPTM4BQ86VI4 370 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 PSD4Q8NDX1 1056 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 OR6T1Q8NGN1 323 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 OR6F1Q8NGZ6 308 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 BBS4Q96RK4 519 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 C17orf62Q9BQA9 187 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 FAIM2Q9BWQ8 316 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 TIGARQ9NQ88 270 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 SLC35C2Q9NQQ7 365 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 CTPS2Q9NRF8 586 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 MAN2C1Q9NTJ4 1040 aa17.67■□□□□ 0.42
CPSF3-201ENST00000238112 TESQ9UGI8 421 aaKnown RBP17.67■□□□□ 0.42
CPSF3-201ENST00000238112 LINC00854A0A1B0GVQ3 168 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 A0A1W2PPV9 198 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 NR2F6P10588 404 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 EPCAMP16422 314 aa17.66■□□□□ 0.42
CPSF3-201ENST00000238112 GSTM3P21266 225 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms