RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 DEFB134Q4QY38 66 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 MPP7Q5T2T1 576 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 REEP3Q6NUK4 255 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM214Q6NUQ4 689 aaKnown RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF585AQ6P3V2 769 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SLCO6A1Q86UG4 719 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ERI1Q8IV48 349 aaKnown RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 GALNT6Q8NCL4 622 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 BBS10Q8TAM1 723 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ZBED3Q96IU2 234 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM100Q9NV29 134 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 MGAT4CQ9UBM8 478 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 OR1A2Q9Y585 309 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 NEURL4Q96JN8 1562 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ZSCAN5BA6NJL1 495 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 C2CD4BA6NLJ0 364 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF891A8MT65 544 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 M0R036 132 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 BCAS1O75363 584 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 PSMG1O95456 288 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 MT-ND2P03891 347 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 LCATP04180 440 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 BPGMP07738 259 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 IFI30P13284 250 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 LHCGRP22888 699 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 MPSTP25325 297 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SLC25A3Q00325 362 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 EEF1A2Q05639 463 aaKnown RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF33AQ06730 810 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 RUNDC3AQ59EK9 446 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM71Q6P5X7 295 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 PYROXD2Q8N2H3 581 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 CLIP4Q8N3C7 705 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 OR4N2Q8NGD1 307 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 JOSD2Q8TAC2 188 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TBC1D15Q8TC07 691 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 CLEC4DQ8WXI8 215 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ART4Q93070 314 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 FZD8Q9H461 694 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 NUDT15Q9NV35 164 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 LRIT1Q9P2V4 623 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SEC14L4Q9UDX3 406 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 CNTN6Q9UQ52 1028 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF451Q9Y4E5 1061 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 MIA3Q5JRA6 1907 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 CLDN25C9JDP6 229 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 S1PR4O95977 384 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ACRV1P26436 265 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TAS2R40P59535 323 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 GALNT10Q86SR1 603 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF584Q8IVC4 421 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 CDKN2AIPNLQ96HQ2 116 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TRIB3Q96RU7 358 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ZDHHC5Q9C0B5 715 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 UBE2J1Q9Y385 318 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TDRD6O60522 2096 aaKnown RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ATP6V1G1O75348 118 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 PLATP00750 562 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 MAGEA3P43357 314 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ASPAP45381 313 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 RAB13P51153 203 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 NR1H2P55055 460 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 DCDP81605 110 aaKnown RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 HES1Q14469 280 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 DCAF12L1Q5VU92 463 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 VGLL2Q8N8G2 317 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 VN1R2Q8NFZ6 395 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SLC44A1Q8WWI5 657 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM109Q9BVC6 243 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 CD244Q9BZW8 370 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 LRFN1Q9P244 771 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 GMEB1Q9Y692 573 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 F2RP25116 425 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 CDKN2BP42772 138 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SNU13P55769 128 aaKnown RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 CDONQ4KMG0 1287 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 AADACL2Q6P093 401 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 FIGLAQ6QHK4 219 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 AKAP14Q86UN6 197 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TSEN2Q8NCE0 465 aaKnown RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 C9orf43Q8TAL5 461 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SERINC2Q96SA4 455 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SYT3Q9BQG1 590 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 POLR2J2Q9GZM3 115 aaKnown RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ATG5Q9H1Y0 275 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 OR51B6Q9H340 312 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SMPD3Q9NY59 655 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TLR4O00206 839 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ITGB2P05107 769 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 GKN3PP0CG01 181 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 RAP2AP10114 183 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SLC2A1P11166 492 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 DRD2P14416 443 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 CD53P19397 219 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 RING1Q06587 406 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 RPA4Q13156 261 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 CNN3Q15417 329 aaKnown RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 NCEH1Q6PIU2 408 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 OPN5Q6U736 354 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ACVR1CQ8NER5 493 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms