RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 GFM1Q96RP9 751 aaKnown RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 CSF3RQ99062 836 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 DPH2Q9BQC3 489 aaPredicted RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SLC35A5Q9BS91 424 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 EFHD1Q9BUP0 239 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 FAM117AQ9C073 453 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 PDE7BQ9NP56 450 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SLC35C2Q9NQQ7 365 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 ACSS1Q9NUB1 689 aaPredicted RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SOHLH2Q9NX45 425 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 PHF11Q9UIL8 331 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 DAPP1Q9UN19 280 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 A0A1W2PNU3 283 aaPredicted RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 DHRS12A0PJE2 317 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 ZNF860A6NHJ4 632 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 PLD2O14939 933 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 CASQ2O14958 399 aaPredicted RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SLC28A2O43868 658 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 ZBTB11O95625 1053 aaPredicted RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 NTRK1P04629 796 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 NR2F6P10588 404 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 PNLIPP16233 465 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 PSMA4P25789 261 aaKnown RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SLC7A1P30825 629 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 NTSP30990 170 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 CCKBRP32239 447 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 PTGER1P34995 402 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SOAT1P35610 550 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SOX18P35713 384 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 CDK9P50750 372 aaKnown RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 CRYBA2P53672 197 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 CASP9P55211 416 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 LIM2P55344 173 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 POLE2P56282 527 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 OLR1P78380 273 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 MLC1Q15049 377 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 RGNQ15493 299 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 NKG7Q16617 165 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 AMZ1Q400G9 498 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 MTX3Q5HYI7 312 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 HMBOX1Q6NT76 420 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SLC48A1Q6P1K1 146 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 ERICH5Q6P6B1 374 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 ANGPTL8Q6UXH0 198 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 USP53Q70EK8 1073 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 TMPRSS9Q7Z410 1059 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 PQLC1Q8N2U9 271 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 Q8N9G6 341 aaPredicted RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 ZSCAN1Q8NBB4 408 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 TMEM52Q8NDY8 209 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 OR5T3Q8NGG3 340 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 OR5AK3PQ8NH89 298 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 FIG4Q92562 907 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 N4BP2L2Q92802 583 aaPredicted RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 ZNF681Q96N22 645 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 AMDHD1Q96NU7 426 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 BBS4Q96RK4 519 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 PKP2Q99959 881 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SPATA9Q9BWV2 254 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SEMA4CQ9C0C4 833 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 B3GNT4Q9C0J1 378 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 CHRNA10Q9GZZ6 450 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 GLIPR2Q9H4G4 154 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 GORASP2Q9H8Y8 452 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 CCM2LQ9NUG4 571 aaPredicted RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 GIMAP4Q9NUV9 329 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 MS4A12Q9NXJ0 267 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 C6orf203Q9P0P8 240 aaPredicted RBP8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SEMA5BQ9P283 1151 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 KLHL3Q9UH77 587 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 PSME2Q9UL46 239 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 ENTPD4Q9Y227 616 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 AP4S1Q9Y587 144 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SNX8Q9Y5X2 465 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SLC22A7Q9Y694 548 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 SPACA6W5XKT8 324 aa8.94□□□□□ -0.98
PDLIM5-223ENST00000627587 MN1Q10571 1320 aaPredicted RBP8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 MYO1GB0I1T2 1018 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 CXCR6O00574 342 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 GALR3O60755 368 aaPredicted RBP8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 TNFRSF21O75509 655 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 GCM2O75603 506 aaPredicted RBP8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 ERAL1O75616 437 aaKnown RBP8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 GPIP06744 558 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 UMPSP11172 480 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 UQCRC2P22695 453 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 CPN2P22792 545 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 TLX1P31314 330 aaPredicted RBP8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 CHI3L1P36222 383 aaPredicted RBP8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 VHLP40337 213 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 SKP1P63208 163 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 TNFRSF17Q02223 184 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 HSPB3Q12988 150 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 KCNAB1Q14722 419 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 NDUFA9Q16795 377 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 IRAK1BP1Q5VVH5 260 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 CPZQ66K79 652 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 SPRED1Q7Z699 444 aa8.93□□□□□ -0.98
PDLIM5-223ENST00000627587 PAPD5Q8NDF8 572 aaKnown RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms