RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ZNF324O75467 553 aaPredicted RBP1.56□□□□□ -2.16
SCN1A-208ENST00000625916 LDHCP07864 332 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 CCNE1P24864 410 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 AXLP30530 894 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 NPY4RP50391 375 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 ARHGDIBP52566 201 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 PTENP60484 403 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 NUCB1Q02818 461 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 GTF3C1Q12789 2109 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 PRR4Q16378 134 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 TXNRD3NBQ6F5E7 133 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 C16orf54Q6UWD8 224 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 APOOLQ6UXV4 268 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 TMEM182Q6ZP80 229 aaPredicted RBP1.56□□□□□ -2.16
SCN1A-208ENST00000625916 MOB1BQ7L9L4 216 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 PCGF5Q86SE9 256 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 ANKRD46Q86W74 232 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 LSMEM1Q8N8F7 131 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF397Q8NF99 534 aaPredicted RBP1.56□□□□□ -2.16
SCN1A-208ENST00000625916 OCC1Q8TAD7 63 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 PHF10Q8WUB8 498 aaKnown RBP1.56□□□□□ -2.16
SCN1A-208ENST00000625916 RIT1Q92963 219 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 MRPL24Q96A35 216 aaKnown RBP1.56□□□□□ -2.16
SCN1A-208ENST00000625916 BSCL2Q96G97 398 aaPredicted RBP1.56□□□□□ -2.16
SCN1A-208ENST00000625916 C19orf24Q9BVV8 132 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 OR10A4Q9H209 315 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 TMED7Q9Y3B3 224 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 FLVCR1Q9Y5Y0 555 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 HTR3EA5X5Y0 456 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 SERPINE3A8MV23 424 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 RTN2O75298 545 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 CSDE1O75534 798 aaKnown RBP1.55□□□□□ -2.16
SCN1A-208ENST00000625916 ANXA9O76027 345 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 TOXO94900 526 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 NUDT14O95848 222 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 FAM58BPP0C7Q3 252 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 TSPY3P0CV98 308 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 TSPY8P0CW00 308 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 ADRA2CP18825 462 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 ZP3P21754 424 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 PRKCIP41743 596 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 NPBWR1P48145 328 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 SLC26A2P50443 739 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 CAV2P51636 162 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF41P51814 821 aaPredicted RBP1.55□□□□□ -2.16
SCN1A-208ENST00000625916 CDO1Q16878 200 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 SPATA46Q5T0L3 261 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 LRRC31Q6UY01 552 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 CREBRFQ8IUR6 639 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 GPR65Q8IYL9 337 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 CADM2Q8N3J6 435 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 CHDHQ8NE62 594 aaPredicted RBP1.55□□□□□ -2.16
SCN1A-208ENST00000625916 OR4F5Q8NH21 305 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 SETD6Q8TBK2 473 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 GBP5Q96PP8 586 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 RAB40CQ96S21 281 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 JPH2Q9BR39 696 aaPredicted RBP1.55□□□□□ -2.16
SCN1A-208ENST00000625916 CHRDL1Q9BU40 450 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 ST6GALNAC5Q9BVH7 336 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 MINDY3Q9H8M7 445 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 LMAN1LQ9HAT1 526 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF282Q9UDV7 671 aaPredicted RBP1.55□□□□□ -2.16
SCN1A-208ENST00000625916 CFDP1Q9UEE9 299 aaPredicted RBP1.55□□□□□ -2.16
SCN1A-208ENST00000625916 CIDEBQ9UHD4 219 aa1.55□□□□□ -2.16
SCN1A-208ENST00000625916 ILVBLA1L0T0 632 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 C5orf52A6NGY3 159 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 ANKDD1BA6NHY2 528 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 K7ERI5 159 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 M0R296 226 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 PLOD3O60568 738 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 IGHV3-23P01764 117 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 IGHV3-9P01782 118 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 CD5P06127 495 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 APOA4P06727 396 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 PVRP15151 417 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 IDSP22304 550 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 ACP1P24666 158 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 SOAT1P35610 550 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 OR3A1P47881 315 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 SLC7A2P52569 658 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 FOLH1Q04609 750 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 EIF4EBP1Q13541 118 aaPredicted RBP1.54□□□□□ -2.16
SCN1A-208ENST00000625916 KCTD2Q14681 263 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 TWISTNBQ3B726 338 aaPredicted RBP1.54□□□□□ -2.16
SCN1A-208ENST00000625916 CAPN13Q6MZZ7 669 aaPredicted RBP1.54□□□□□ -2.16
SCN1A-208ENST00000625916 CASC4Q6P4E1 433 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 SPATA19Q7Z5L4 167 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 TMEM179BQ7Z7N9 219 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 UNC5CLQ8IV45 518 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF444Q8N0Y2 327 aaPredicted RBP1.54□□□□□ -2.16
SCN1A-208ENST00000625916 OR8H2Q8N162 312 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 CCDC197Q8NCU1 140 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 Q8NFD4 153 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 PCED1BQ96HM7 432 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 IDI2Q9BXS1 227 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 LSG1Q9H089 658 aaKnown RBP1.54□□□□□ -2.16
SCN1A-208ENST00000625916 EHD1Q9H4M9 534 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 ADGRL4Q9HBW9 690 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 CHCHD3Q9NX63 227 aaKnown RBP1.54□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF223Q9UK11 482 aaPredicted RBP1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms