RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 CSF1P09603 554 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 UGT2B7P16662 529 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 DRD5P21918 477 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 PCGF2P35227 344 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 CLCN7P51798 805 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 HMGN3Q15651 99 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 SYT6Q5T7P8 510 aaPredicted RBP8.53□□□□□ -1.04
VCL-206ENST00000623461 RAB11FIP2Q7L804 512 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 OR52N2Q8NGI0 321 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 THEM6Q8WUY1 208 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 SLC38A1Q9H2H9 487 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 SCAMP2O15127 329 aaKnown RBP8.53□□□□□ -1.04
VCL-206ENST00000623461 SMAD9O15198 467 aaKnown RBP8.53□□□□□ -1.04
VCL-206ENST00000623461 NUPL2O15504 423 aaKnown RBP8.53□□□□□ -1.04
VCL-206ENST00000623461 PRAMEF11O60813 436 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 PTBP1P26599 531 aaKnown RBP eCLIP8.53□□□□□ -1.043e-7■■■■□ 20.9
VCL-206ENST00000623461 TIA1P31483 386 aaKnown RBP eCLIP8.53□□□□□ -1.041e-6■■■■■ 33.5
VCL-206ENST00000623461 CAMLGP49069 296 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 FXYD6P3P58550 94 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 OPCMLQ14982 345 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 GPR68Q15743 365 aa8.53□□□□□ -1.04
VCL-206ENST00000623461 MRPS30Q9NP92 439 aaKnown RBP8.53□□□□□ -1.04
VCL-206ENST00000623461 ALS2Q96Q42 1657 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 LOC102723532A0A0G2JNH3 316 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 TRBV2A0A0J9YWF9 115 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 SSX4O60224 188 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 TSPAN15O95858 294 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 RAB40BQ12829 278 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 TIGD3Q6B0B8 471 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 CFAP77Q6ZQR2 320 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 GRHL3Q8TE85 626 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 GGHQ92820 318 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 PTPN18Q99952 460 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 ABI3Q9P2A4 366 aa8.52□□□□□ -1.04
VCL-206ENST00000623461 ACOT7O00154 380 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 C1QBP02746 253 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 NDUFV2P19404 249 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 TUBG1P23258 451 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 DLSTP36957 453 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 ZNF252P-AS1Q0IIN9 211 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 PEA15Q15121 130 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 ZNF648Q5T619 568 aaPredicted RBP8.52□□□□□ -1.05
VCL-206ENST00000623461 CLDN22Q8N7P3 220 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 HAVCR2Q8TDQ0 301 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 THAP4Q8WY91 577 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 ISL2Q96A47 359 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 RBM18Q96H35 190 aaKnown RBP8.52□□□□□ -1.05
VCL-206ENST00000623461 SLC2A13Q96QE2 648 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 SLC28A3Q9HAS3 691 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 POLHQ9Y253 713 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 GPR45Q9Y5Y3 372 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 NUP188Q5SRE5 1749 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 TBC1D3BA6NDS4 549 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 B3GALNT1O75752 331 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 CPNE6O95741 557 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 JUPP14923 745 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 HLA-DMAP28067 261 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 AVPI1Q5T686 147 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 METTL2BQ6P1Q9 378 aaKnown RBP8.52□□□□□ -1.05
VCL-206ENST00000623461 VTCN1Q7Z7D3 282 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 CELF2-AS1Q8N7Q2 184 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 RASGEF1AQ8N9B8 481 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 DBF4BQ8NFT6 615 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 NLGN2Q8NFZ4 835 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 OR56B4Q8NH76 319 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 A0A1W2PPL8 197 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 LRRC72A6NJI9 287 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 ZNF208O43345 1280 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 HPGDSO60760 199 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 EDNRBP24530 442 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 GLP1RP43220 463 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 ZNF674Q2M3X9 581 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 DUSP28Q4G0W2 176 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 AGTRAPQ6RW13 159 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 CHST9Q7L1S5 443 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 FAM217AQ8IXS0 508 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 SUN3Q8TAQ9 357 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 SCGB1C1Q8TD33 95 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 SLC5A11Q8WWX8 675 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 NSMAFQ92636 917 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 KCTD12Q96CX2 325 aaKnown RBP8.52□□□□□ -1.05
VCL-206ENST00000623461 LIPT1Q9Y234 373 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 TVP23AA6NH52 213 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 STBD1O95210 358 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 CD52P31358 61 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 SOX3P41225 446 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 MLLT10P55197 1068 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 DBPQ10586 325 aaPredicted RBP8.52□□□□□ -1.05
VCL-206ENST00000623461 PCBP2Q15366 365 aaKnown RBP eCLIP8.52□□□□□ -1.051e-6■□□□□ 11.2
VCL-206ENST00000623461 DPY19L2P1Q6NXN4 242 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 FBXL22Q6P050 247 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 KCTD20Q7Z5Y7 419 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.52□□□□□ -1.052e-47■■■■□ 20.5
VCL-206ENST00000623461 SMAP2Q8WU79 429 aaPredicted RBP8.52□□□□□ -1.05
VCL-206ENST00000623461 NT5C3BQ969T7 300 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 HS6ST2Q96MM7 605 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 ZNF558Q96NG5 402 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 C17orf62Q9BQA9 187 aa8.52□□□□□ -1.05
VCL-206ENST00000623461 HMX1Q9NP08 348 aaPredicted RBP8.52□□□□□ -1.05
VCL-206ENST00000623461 RHPN2P1A8MT19 583 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms