RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 PDHA2P29803 388 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 CRHR2Q13324 411 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 MICBQ29980 383 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 UAP1L1Q3KQV9 507 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 PLA1AQ53H76 456 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 NXPE4Q6UWF7 544 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 FAM131BQ86XD5 332 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 NKAIN4Q8IVV8 208 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 LIX1Q8N485 282 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 OR4A15Q8NGL6 344 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 OR2T11Q8NH01 316 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 C1GALT1C1Q96EU7 318 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 FCRL1Q96LA6 429 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 ZIC5Q96T25 663 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 QRSL1Q9H0R6 528 aaKnown RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 ZNF226Q9NYT6 803 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 CNOT2Q9NZN8 540 aaKnown RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 NUBP2Q9Y5Y2 271 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 RHPN2P1A8MT19 583 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 FAM220BPB1ANY3 271 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 CASKO14936 926 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 SMAD9O15198 467 aaKnown RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 GJB3O75712 270 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 SOX30O94993 753 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 CXCL14O95715 111 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 ESR1P03372 595 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 CRYBA1P05813 215 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 RB1P06400 928 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 EIF2S3P41091 472 aaKnown RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 RABIFP47224 123 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 AVPR1BP47901 424 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 EVX1P49640 407 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 CTBP2P56545 445 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 ZNF280AP59817 542 aaPredicted RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 CDC42P60953 191 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 RBMS2Q15434 407 aaKnown RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 ARHGAP15Q53QZ3 475 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 FBXO48Q5FWF7 155 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 DCAF15Q66K64 600 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 EFCAB12Q6NXP0 572 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 ZNF730Q6ZMV8 503 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 DEF8Q6ZN54 512 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 HUS1BQ8NHY5 278 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 TMEM163Q8TC26 289 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 METTL6Q8TCB7 284 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 DTD1Q8TEA8 209 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 WFIKKN2Q8TEU8 576 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 ZNF599Q96NL3 588 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 C11orf84Q9BUA3 381 aaPredicted RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 C11orf16Q9NQ32 467 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 OBP2AQ9NY56 170 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 SLC2A6Q9UGQ3 507 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 TSPAN16Q9UKR8 245 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 GSTK1Q9Y2Q3 226 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 CFAP20Q9Y6A4 193 aaKnown RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 PPEF2O14830 753 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 PSMD3O43242 534 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 PRKRAO75569 313 aaKnown RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 SNAPC5O75971 98 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 THEGLP0DJG4 465 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 SULT1A3P0DMM9 295 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 SULT1A4P0DMN0 295 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 PEPDP12955 493 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 SFNP31947 248 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 CD79BP40259 229 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 CAV3P56539 151 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 SURF1Q15526 300 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 C3orf38Q5JPI3 329 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 SFRP5Q5T4F7 317 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 ATG9BQ674R7 924 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 SLC22A25Q6T423 547 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 PTCHD4Q6ZW05 846 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 PGAP1Q75T13 922 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 KDELC2Q7Z4H8 507 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 TP53INP2Q8IXH6 220 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 TMEM130Q8N3G9 435 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 FBXO39Q8N4B4 442 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 AKR7LQ8NHP1 331 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 KAT2AQ92830 837 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 RFT1Q96AA3 541 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 ARHGAP39Q9C0H5 1083 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 R3HDMLQ9H3Y0 253 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 OR6C2Q9NZP2 312 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 GHRLQ9UBU3 117 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 ING1Q9UK53 422 aaPredicted RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 MED16Q9Y2X0 877 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 POLR3HQ9Y535 204 aaPredicted RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 A0A1B0GTL3 188 aa7.53□□□□□ -1.2
VPS11-209ENST00000622309 LOC285095A0A1B0GVY8 99 aa7.53□□□□□ -1.2
VPS11-209ENST00000622309 METTL21EPA6NDL7 271 aa7.53□□□□□ -1.2
VPS11-209ENST00000622309 LCMT2O60294 686 aaKnown RBP7.53□□□□□ -1.2
VPS11-209ENST00000622309 OR1I1O60431 355 aa7.53□□□□□ -1.2
VPS11-209ENST00000622309 SERPINA3P01011 423 aa7.53□□□□□ -1.2
VPS11-209ENST00000622309 SPI1P17947 270 aa7.53□□□□□ -1.2
VPS11-209ENST00000622309 DDX6P26196 483 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS11-209ENST00000622309 ARSDP51689 593 aa7.53□□□□□ -1.2
VPS11-209ENST00000622309 ZNF157P51786 506 aaPredicted RBP7.53□□□□□ -1.2
VPS11-209ENST00000622309 VLDLRP98155 873 aa7.53□□□□□ -1.2
VPS11-209ENST00000622309 NCF4Q15080 339 aa7.53□□□□□ -1.2
VPS11-209ENST00000622309 FAM174BQ3ZCQ3 159 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms