RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ATF6BQ99941 703 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 PELOQ9BRX2 385 aaKnown RBP10.28□□□□□ -0.76
UPF3A-212ENST00000619079 NKX2-4Q9H2Z4 354 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 COPZ2Q9P299 210 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 SCP2D1Q9UJQ7 156 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 MGAT4BQ9UQ53 548 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 BAIAP2Q9UQB8 552 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 RUVBL1Q9Y265 456 aaKnown RBP10.28□□□□□ -0.76
UPF3A-212ENST00000619079 PRG3Q9Y2Y8 225 aaPredicted RBP10.28□□□□□ -0.76
UPF3A-212ENST00000619079 NUBP2Q9Y5Y2 271 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 TRIOBPQ9H2D6 2365 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 TRDV1A0A1B0GX56 115 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 PCDH7O60245 1069 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 IFNW1P05000 195 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 BPIP17213 487 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 RAB3AP20336 220 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 DNASE1P24855 282 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 ASMTP46597 345 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 PGFP49763 221 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 AGFG1P52594 562 aaKnown RBP10.28□□□□□ -0.76
UPF3A-212ENST00000619079 CYP4F8P98187 520 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 SCARB2Q14108 478 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 ARHGAP15Q53QZ3 475 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 SLC25A30Q5SVS4 291 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 CPTPQ5TA50 214 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 FRG2Q64ET8 278 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 ZNF770Q6IQ21 691 aaPredicted RBP10.28□□□□□ -0.76
UPF3A-212ENST00000619079 CAMKMTQ7Z624 323 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 ASPGQ86U10 573 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 NAGSQ8N159 534 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 OR52H1Q8NGJ2 320 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 CEP76Q8TAP6 659 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 SLC9A6Q92581 669 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 RFT1Q96AA3 541 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 TIFAQ96CG3 184 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 FRG2BQ96QU4 278 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 UBL7Q96S82 380 aaPredicted RBP10.28□□□□□ -0.76
UPF3A-212ENST00000619079 PKMYT1Q99640 499 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 ABCG5Q9H222 651 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 DPAGT1Q9H3H5 408 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 RERGLQ9H628 205 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 CERS4Q9HA82 394 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 RC3H2Q9HBD1 1191 aaKnown RBP10.28□□□□□ -0.76
UPF3A-212ENST00000619079 LATS2Q9NRM7 1088 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 SCML1Q9UN30 329 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 YBX2Q9Y2T7 364 aaKnown RBP10.28□□□□□ -0.76
UPF3A-212ENST00000619079 PATJQ8NI35 1801 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 SZT2Q5T011 3432 aa10.28□□□□□ -0.76
UPF3A-212ENST00000619079 LINC01553A4QN01 128 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 ANKRD66B4E2M5 251 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 SCAMP2O15127 329 aaKnown RBP10.27□□□□□ -0.76
UPF3A-212ENST00000619079 MPC2O95563 127 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 LAMP1P11279 417 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 WEE1P30291 646 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 SLC6A4P31645 630 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 CTNNB1P35222 781 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 MMP12P39900 470 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 CRATP43155 626 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 RPS25P62851 125 aaKnown RBP10.27□□□□□ -0.76
UPF3A-212ENST00000619079 TUSC3Q13454 348 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 CAMK1Q14012 370 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 LGALSLQ3ZCW2 172 aaPredicted RBP10.27□□□□□ -0.76
UPF3A-212ENST00000619079 TIGD5Q53EQ6 642 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 CRB2Q5IJ48 1285 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 BHLHB9Q6PI77 547 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 LIPIQ6XZB0 460 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 CFAP77Q6ZQR2 320 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 RRM2BQ7LG56 351 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 ABI3BPQ7Z7G0 1075 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 SPATA2LQ8IUW3 424 aaPredicted RBP10.27□□□□□ -0.76
UPF3A-212ENST00000619079 LURAP1LQ8IV03 231 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 MS4A15Q8N5U1 240 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 OR52I1Q8NGK6 324 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 HASPINQ8TF76 798 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 RIT1Q92963 219 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 MARC2Q969Z3 335 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 SLC6A18Q96N87 628 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 TMEM175Q9BSA9 504 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 ZNF416Q9BWM5 594 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 EBPLQ9BY08 206 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 MAGEH1Q9H213 219 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 IFT22Q9H7X7 185 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 SCPEP1Q9HB40 452 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 ZNF304Q9HCX3 659 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 BPIFA1Q9NP55 256 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 SDHAF2Q9NX18 166 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 SLCO1C1Q9NYB5 712 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 KCND3Q9UK17 655 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 SF3B6Q9Y3B4 125 aaKnown RBP10.27□□□□□ -0.76
UPF3A-212ENST00000619079 HRH3Q9Y5N1 445 aa10.27□□□□□ -0.76
UPF3A-212ENST00000619079 MEIKINA0A087WXM9 373 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 MFSD2BA6NFX1 497 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 CBX4O00257 560 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 AKAP8O43823 692 aaKnown RBP10.27□□□□□ -0.77
UPF3A-212ENST00000619079 SLC25A14O95258 325 aaPredicted RBP10.27□□□□□ -0.77
UPF3A-212ENST00000619079 SOD1P00441 154 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 LAG3P18627 525 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 EPORP19235 508 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 AVPR1BP47901 424 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 XKP51811 444 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms