RNA–Protein interactions for RNA: ENST00000616390.1

CACNA1C-231, Transcript of calcium voltage-gated channel subunit alpha1 C, human

TSL 2 BASIC

Gene CACNA1C, Length 2,833 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1C-231	ENST00000616390	DNAJC27	Q9NZQ0	273 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	GPSM3	Q9Y4H4	160 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	PDZK1P1	A8MUH7	402 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390		M0R3H8	397 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	HMGN4	O00479	90 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	KPNA4	O00629	521 aa	Predicted RBP	13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CHRNB1	P11230	501 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CKMT1A	P12532	417 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	TNNI3	P19429	210 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	GJA4	P35212	333 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	LSM11	P83369	360 aa	Known RBP eCLIP	13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CARTPT	Q16568	116 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	RFPL4B	Q6ZWI9	263 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	SP7	Q8TDD2	431 aa	Predicted RBP	13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	OR5P2	Q8WZ92	322 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	SMPDL3A	Q92484	453 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	PDXP	Q96GD0	296 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390		Q96MT0	163 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	MOGAT1	Q96PD6	335 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	TEFM	Q96QE5	360 aa	Known RBP	13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	PRR14	Q9BWN1	585 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	RERGL	Q9H628	205 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	SCPEP1	Q9HB40	452 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	SEMA3G	Q9NS98	782 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390	FBXW2	Q9UKT8	454 aa		13.16	□□□□□ -0.3
CACNA1C-231	ENST00000616390		A0A1W2PPV9	198 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390		A0A1W2PS29	197 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	DPM1	O60762	260 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	KAT7	O95251	611 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	NR2F1	P10589	423 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CD72	P21854	359 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	ALAS2	P22557	587 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CXCR2	P25025	360 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	OPRD1	P41143	372 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CRISP1	P54107	249 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	GPM6B	Q13491	265 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	PDGFRL	Q15198	375 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	MLF2	Q15773	248 aa	Predicted RBP	13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	FRMPD2B	Q6IN97	320 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	IKBIP	Q70UQ0	350 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	WDR53	Q7Z5U6	358 aa	Predicted RBP	13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	NUDT13	Q86X67	352 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	OR8K5	Q8NH50	307 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	S100Z	Q8WXG8	99 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	RGMA	Q96B86	450 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	NEURL3	Q96EH8	262 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	SIGLEC11	Q96RL6	698 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	DPH7	Q9BTV6	452 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	TRMT61B	Q9BVS5	477 aa	Known RBP	13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	OR51I1	Q9H343	314 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	DSN1	Q9H410	356 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	WDR26	Q9H7D7	661 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	PALMD	Q9NP74	551 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CRNN	Q9UBG3	495 aa	Predicted RBP	13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	TRBV23OR9-2	A0A075B6M9	112 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	TRAV6	A0A075B6T7	132 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	KRBA1	A5PL33	1030 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	MFN2	O95140	757 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CHRM5	P08912	532 aa	Predicted RBP	13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	TIE1	P35590	1138 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CSNK2B	P67870	215 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	RELA	Q04206	551 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	TARDBP	Q13148	414 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	IRF4	Q15306	451 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	DCST1	Q5T197	706 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	NDUFAF5	Q5TEU4	345 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	FAM46C	Q5VWP2	391 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	SAXO2	Q658L1	398 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	VIT	Q6UXI7	678 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	UBE3D	Q7Z6J8	389 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CCDC116	Q8IYX3	515 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	IQCF1	Q8N6M8	205 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	TMEM145	Q8NBT3	493 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	WDR36	Q8NI36	951 aa	Known RBP	13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	KXD1	Q9BQD3	176 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	BTBD2	Q9BX70	525 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	QRSL1	Q9H0R6	528 aa	Known RBP	13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	EQTN	Q9NQ60	294 aa		13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	SIRT3	Q9NTG7	399 aa	Predicted RBP	13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	ZCCHC3	Q9NUD5	404 aa	Known RBP	13.15	□□□□□ -0.3
CACNA1C-231	ENST00000616390	CLDN24	A6NM45	220 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	CNOT3	O75175	753 aa	Known RBP	13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	RPN2	P04844	631 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	CBL	P22681	906 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	NCBP2	P52298	156 aa	Known RBP eCLIP	13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	RAB8A	P61006	207 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	CSNK1G2	P78368	415 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	SLC13A2	Q13183	592 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	EIF4H	Q15056	248 aa	Known RBP	13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	GPR19	Q15760	415 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	TST	Q16762	297 aa	Known RBP	13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	TCTN3	Q6NUS6	607 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	C7orf61	Q8IZ16	206 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	MFSD4A	Q8N468	514 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	BBS4	Q96RK4	519 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	PLA2G2F	Q9BZM2	168 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	FAM117A	Q9C073	453 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	MVB12B	Q9H7P6	319 aa		13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	EXOSC4	Q9NPD3	245 aa	Known RBP	13.14	□□□□□ -0.31
CACNA1C-231	ENST00000616390	ZNF229	Q9UJW7	825 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms