RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 HCRTR2O43614 444 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 ALDOCP09972 364 aaKnown RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 DRD2P14416 443 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 EPCAMP16422 314 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 EIF5AP63241 154 aaKnown RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 NTHL1P78549 312 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 PIN1Q13526 163 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-212ENST00000616140 PLEKHG7Q6ZR37 379 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 PROKR1Q8TCW9 393 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 CARD8Q9Y2G2 431 aa13.37□□□□□ -0.27
CPSF1-212ENST00000616140 NUP98P52948 1817 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 C11orf98E9PRG8 122 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 TGM5O43548 720 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 TOXO94900 526 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 RAB28P51157 221 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 BTBD16Q32M84 506 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 HSD17B12Q53GQ0 312 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 TMPRSS9Q7Z410 1059 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 KLHDC8AQ8IYD2 350 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 LRRC25Q8N386 305 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-212ENST00000616140 OR6N1Q8NGY5 312 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 RAD9AQ99638 391 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 LINC00597Q9H2U6 94 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 IL21RQ9HBE5 538 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 FARSAQ9Y285 508 aaKnown RBP13.36□□□□□ -0.27
CPSF1-212ENST00000616140 NOTOA8MTQ0 251 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 WASH4PA8MWX3 477 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 OXSR1O95747 527 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-212ENST00000616140 TFAP2AP05549 437 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 CYBAP13498 195 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 CPOXP36551 454 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF140P52738 457 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-212ENST00000616140 C1orf61Q13536 156 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 GRHL2Q6ISB3 625 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 SHFQ7M4L6 423 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 RETREG3Q86VR2 466 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 IQCF1Q8N6M8 205 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 RBP7Q96R05 134 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 METTL8Q9H825 291 aaKnown RBP13.36□□□□□ -0.27
CPSF1-212ENST00000616140 PAQR5Q9NXK6 330 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-212ENST00000616140 MEMO1Q9Y316 297 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 OR1A2Q9Y585 309 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 TEX46H3BTG2 121 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 ITGA5P08648 1049 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 AK4P27144 223 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-212ENST00000616140 GSTM4Q03013 218 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 CRYZQ08257 329 aaKnown RBP13.36□□□□□ -0.27
CPSF1-212ENST00000616140 MANEALQ5VSG8 457 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.36□□□□□ -0.277e-8■■■□□ 18.9
CPSF1-212ENST00000616140 CBARPQ8N350 705 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-212ENST00000616140 LMX1AQ8TE12 382 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 PXYLP1Q8TE99 480 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 KLHDC7BQ96G42 594 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 TMEM41AQ96HV5 264 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 ACPTQ9BZG2 426 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 PCDHGA3Q9Y5H0 932 aa13.36□□□□□ -0.27
CPSF1-212ENST00000616140 TAS2R38P59533 333 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 PSMA6P60900 246 aaKnown RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 SELENOWP63302 87 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 PRKCDQ05655 676 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 SGCBQ16585 318 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF791Q3KP31 576 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 ABCA11PQ4W5N1 156 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 RAB41Q5JT25 222 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 NDUFAF5Q5TEU4 345 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 SLC9B2Q86UD5 537 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 SPARTQ8N0X7 666 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 MFSD2AQ8NA29 543 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 AVL9Q8NBF6 648 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 OR4K17Q8NGC6 315 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 THAP6Q8TBB0 222 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 HCAR2Q8TDS4 363 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 CASTOR1Q8WTX7 329 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 WDR92Q96MX6 357 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 NELL2Q99435 816 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 FAM83CQ9BQN1 747 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 NPLQ9BXD5 320 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 SRA1Q9HD15 236 aaKnown RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 PRTFDC1Q9NRG1 225 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 C13orf42A0A1B0GVH6 325 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 OR6C74A6NCV1 312 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 HEPACAM2A8MVW5 462 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 ARNTLO00327 626 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 PLD2O14939 933 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 CSTBP04080 98 aaKnown RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 CFIP05156 583 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 HRH2P25021 359 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 LCN1P31025 176 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 SNTB2Q13425 540 aaKnown RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 SMU1Q2TAY7 513 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 EOGTQ5NDL2 527 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 C17orf99Q6UX52 265 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 AMIGO1Q86WK6 493 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 TMEM156Q8N614 296 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 RPLP0P6Q8NHW5 317 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 CCDC120Q96HB5 630 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 MVB12BQ9H7P6 319 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 SH2B3Q9UQQ2 575 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 TCRBV5S1A1TA0A578 114 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms