RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MAPK1P28482 360 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 MPIP34949 423 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 HK2P52789 917 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 SLC37A1P57057 533 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 FOXK1P85037 733 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 FUT7Q11130 342 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 MAP4K2Q12851 820 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 MPEG1Q2M385 716 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 ZNF750Q32MQ0 723 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 ATP6AP1LQ52LC2 224 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 ZNF766Q5HY98 468 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 CES4AQ5XG92 561 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 ATG16L1Q676U5 607 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 FAM71E1Q6IPT2 247 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 ATCAYQ86WG3 371 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 GPALPP1Q8IXQ4 340 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 ZNF781Q8N8C0 355 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 TMEM178AQ8NBL3 297 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 MDS2Q8NDY4 140 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 OR7G1Q8NGA0 311 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 CDC26Q8NHZ8 85 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 RAB3IL1Q8TBN0 382 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 TMEM125Q96AQ2 219 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 MIB2Q96AX9 1013 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 ARL8AQ96BM9 186 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 CNRIP1Q96F85 164 aaPredicted RBP13.95□□□□□ -0.18
UPF1-202ENST00000594243 FCRL1Q96LA6 429 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 C5orf34Q96MH7 638 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 ZNF681Q96N22 645 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 SIGLEC12Q96PQ1 595 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 BRINP2Q9C0B6 783 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 C20orf27Q9GZN8 174 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 LIN28AQ9H9Z2 209 aaKnown RBP13.95□□□□□ -0.18
UPF1-202ENST00000594243 SLC35C2Q9NQQ7 365 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 VPS4AQ9UN37 437 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 TLN1Q9Y490 2541 aaKnown RBP13.95□□□□□ -0.18
UPF1-202ENST00000594243 WWP2O00308 870 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 PEX11AO75192 247 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 SKAP2O75563 359 aaPredicted RBP13.94□□□□□ -0.18
UPF1-202ENST00000594243 NEURL1O76050 574 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 RASAL1O95294 804 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 SP1P08047 785 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 RPL38P63173 70 aaKnown RBP13.94□□□□□ -0.18
UPF1-202ENST00000594243 BST1Q10588 318 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 CEBPEQ15744 281 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 IGFBP7Q16270 282 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 PRICKLE4Q2TBC4 344 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 XKR7Q5GH72 579 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 ZNF468Q5VIY5 522 aaPredicted RBP13.94□□□□□ -0.18
UPF1-202ENST00000594243 SLC25A25Q6KCM7 469 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 TICAM1Q8IUC6 712 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 C9orf40Q8IXQ3 194 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 CCDC116Q8IYX3 515 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 CPAMD8Q8IZJ3 1885 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 VWA5B2Q8N398 1253 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 DOK4Q8TEW6 326 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 ASB15Q8WXK1 588 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 EXOSC8Q96B26 276 aaKnown RBP13.94□□□□□ -0.18
UPF1-202ENST00000594243 C19orf60Q96EN9 201 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 SH3GL2Q99962 352 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 OR10A5Q9H207 317 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 MANSC1Q9H8J5 431 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 ZNF395Q9H8N7 513 aaPredicted RBP13.94□□□□□ -0.18
UPF1-202ENST00000594243 THAP1Q9NVV9 213 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 TAS2R7Q9NYW3 318 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 HAO1Q9UJM8 370 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 CFL2Q9Y281 166 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 BOD1L1Q8NFC6 3051 aa13.94□□□□□ -0.18
UPF1-202ENST00000594243 BSNQ9UPA5 3926 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 C2orf92A0A1B0GVN3 265 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 ATP6AP2A0A1C7CYW4 349 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 A8MVJ9 347 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 ATP6AP2O75787 350 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 BCAS2O75934 225 aaPredicted RBP13.93□□□□□ -0.18
UPF1-202ENST00000594243 WISP1O95388 367 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 CT62P0C5K7 136 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 SSTR4P31391 388 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 ASMTP46597 345 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 ST13P50502 369 aaKnown RBP13.93□□□□□ -0.18
UPF1-202ENST00000594243 MAD2L1Q13257 205 aaPredicted RBP13.93□□□□□ -0.18
UPF1-202ENST00000594243 PIGGQ5H8A4 983 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 HLA-DQA1Q5Y7H0 255 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 FAM180BQ6P0A1 224 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 OPN5Q6U736 354 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 FAM180AQ6UWF9 173 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 SLC15A4Q8N697 577 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 FAM98AQ8NCA5 519 aaKnown RBP13.93□□□□□ -0.18
UPF1-202ENST00000594243 DNAJB8Q8NHS0 232 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 SLC22A8Q8TCC7 542 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 TUBGCP3Q96CW5 907 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 SCMH1Q96GD3 660 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 EGLN2Q96KS0 407 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 C3orf30Q96M34 536 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 BBS4Q96RK4 519 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 RASL10BQ96S79 203 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 SORT1Q99523 831 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 ASF1BQ9NVP2 202 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 HPF1Q9NWY4 346 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 MAT2BQ9NZL9 334 aa13.93□□□□□ -0.18
UPF1-202ENST00000594243 ERVK-11Q9UQG0 969 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms