RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PDZD9Q8IXQ8 264 aa10.33□□□□□ -0.76
CLK3-226ENST00000569406 CENPLQ8N0S6 344 aaPredicted RBP10.33□□□□□ -0.76
CLK3-226ENST00000569406 DCBLD1Q8N8Z6 715 aa10.33□□□□□ -0.76
CLK3-226ENST00000569406 LRRC58Q96CX6 371 aa10.33□□□□□ -0.76
CLK3-226ENST00000569406 PDLIM5Q96HC4 596 aaKnown RBP10.33□□□□□ -0.76
CLK3-226ENST00000569406 GAL3ST4Q96RP7 486 aa10.33□□□□□ -0.76
CLK3-226ENST00000569406 BARD1Q99728 777 aaKnown RBP10.33□□□□□ -0.76
CLK3-226ENST00000569406 PIGQQ9BRB3 760 aa10.33□□□□□ -0.76
CLK3-226ENST00000569406 KLHL1Q9NR64 748 aa10.33□□□□□ -0.76
CLK3-226ENST00000569406 TAS2R3Q9NYW6 316 aa10.33□□□□□ -0.76
CLK3-226ENST00000569406 POLR3HQ9Y535 204 aaPredicted RBP10.33□□□□□ -0.76
CLK3-226ENST00000569406 IRAK3Q9Y616 596 aa10.33□□□□□ -0.76
CLK3-226ENST00000569406 RAD1O60671 282 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 RPS19P39019 145 aaKnown RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 RGS6P49758 472 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 EIF4HQ15056 248 aaKnown RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 FNDC3BQ53EP0 1204 aaKnown RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 CERCAMQ5T4B2 595 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 RGMBQ6NW40 437 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 PDZD4Q76G19 769 aaPredicted RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 HSD17B13Q7Z5P4 300 aaPredicted RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 MFSD6LQ8IWD5 586 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 Q8N402 240 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 TMIEQ8NEW7 156 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 TCTEX1D2Q8WW35 142 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 OTUB1Q96FW1 271 aaPredicted RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 CHIAQ9BZP6 476 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.32□□□□□ -0.762e-7■■■■□ 23.4
CLK3-226ENST00000569406 MUC13Q9H3R2 512 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 PCDHB10Q9UN67 800 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 PCDHB9Q9Y5E1 797 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 DUSP11O75319 330 aaKnown RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 SUPT7LO94864 414 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 HIST1H2AGP0C0S8 130 aaPredicted RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 OR56A5P0C7T3 313 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 CTPS1P17812 591 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 HIST1H2ADP20671 130 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 LCN1P31025 176 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 TPI1P60174 286 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 CTBP1Q13363 440 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 MED22Q15528 200 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 CCDC157Q569K6 752 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 SFRP5Q5T4F7 317 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 HIST2H2AA3Q6FI13 130 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 PSRC1Q6PGN9 363 aaPredicted RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 FAM198BQ6UWH4 519 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 DNAJB7Q7Z6W7 309 aaPredicted RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 LDLRAD3Q86YD5 345 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 LIX1Q8N485 282 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 FCGR1BQ92637 280 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 HIST1H2AHQ96KK5 128 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 LRR1Q96L50 414 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 HIST1H2AJQ99878 128 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 MYOCQ99972 504 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 GGACTQ9BVM4 153 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 FSD1LQ9BXM9 530 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 MRPL37Q9BZE1 423 aaKnown RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 OR51B6Q9H340 312 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 RRAGCQ9HB90 399 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 GLRX2Q9NS18 164 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 OSER1Q9NX31 292 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 WBP1LQ9NX94 342 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 SAMHD1Q9Y3Z3 626 aaKnown RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 A0A075B6Q4 140 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 A0A1W2PQL4 384 aaPredicted RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 M0QZQ0 153 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 CRATP43155 626 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 PPT1P50897 306 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 RORCP51449 518 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 TPGS2Q68CL5 300 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 UNQ6494/PRO21346Q6UXR6 183 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 RPS27LQ71UM5 84 aaKnown RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 FUNDC1Q8IVP5 155 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 SYNPOQ8N3V7 929 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 ZSCAN1Q8NBB4 408 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 WNT2BQ93097 391 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 MRPL38Q96DV4 380 aaKnown RBP10.32□□□□□ -0.76
CLK3-226ENST00000569406 MARVELD1Q9BSK0 173 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 FICDQ9BVA6 458 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 PRO1933Q9H354 126 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 EMC7Q9NPA0 242 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 GFOD1Q9NXC2 390 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 TANC1Q9C0D5 1861 aa10.32□□□□□ -0.76
CLK3-226ENST00000569406 A0A087X0M5 115 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 A0A1B0GX30 115 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 UBA6A0AVT1 1052 aaPredicted RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 PPM1DO15297 605 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 RECKO95980 971 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 THP07101 528 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 RAP2AP10114 183 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 IGFBP5P24593 272 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 PDZK1IP1Q13113 114 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 FAM83EQ2M2I3 478 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 ELP2Q6IA86 826 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 ZNF613Q6PF04 617 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 KCNMB4Q86W47 210 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 SERPINA12Q8IW75 414 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 PELI3Q8N2H9 469 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 OR4Q3Q8NH05 313 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 OR5J2Q8NH18 312 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms