RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 HMGN2P05204 90 aaKnown RBP19.13■□□□□ 0.65
CLN3-230ENST00000568076 NR2F1P10589 423 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 SRP54P61011 504 aaKnown RBP19.13■□□□□ 0.65
CLN3-230ENST00000568076 STXBP1P61764 594 aaKnown RBP19.13■□□□□ 0.65
CLN3-230ENST00000568076 BTN3A2P78410 334 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 LASP1Q14847 261 aaKnown RBP19.13■□□□□ 0.65
CLN3-230ENST00000568076 C11orf91Q3C1V1 193 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 PRRT3Q5FWE3 981 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 FBXO42Q6P3S6 717 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 TMEM107Q6UX40 140 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 ZBTB46Q86UZ6 589 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 TAGAPQ8N103 731 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 DHRS1Q96LJ7 313 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 OR2A14Q96R47 310 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 PLCXD1Q9NUJ7 323 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 PSORS1C1Q9UIG5 152 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 TNFRSF10CO14798 259 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 GABARAPO95166 117 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 CHRM4P08173 479 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 INHBBP09529 407 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 ELAVL4P26378 380 aaKnown RBP19.12■□□□□ 0.65
CLN3-230ENST00000568076 KHKP50053 298 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 MLLT10P55197 1068 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 RPS15AP62244 130 aaKnown RBP19.12■□□□□ 0.65
CLN3-230ENST00000568076 CSNK2BP67870 215 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 PTGES3Q15185 160 aaKnown RBP19.12■□□□□ 0.65
CLN3-230ENST00000568076 MLIPQ5VWP3 458 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 DEF8Q6ZN54 512 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 SVOPQ8N4V2 548 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 DNAJC22Q8N4W6 341 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 SFXN5Q8TD22 340 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 C16orf58Q96GQ5 468 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 ZNF681Q96N22 645 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 C8orf33Q9H7E9 229 aaPredicted RBP19.12■□□□□ 0.65
CLN3-230ENST00000568076 AMBNQ9NP70 447 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 SEMA3GQ9NS98 782 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 FTSJ1Q9UET6 329 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 ENTPD4Q9Y227 616 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 OR2A25A4D2G3 310 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 TMEM247A6NEH6 219 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 LRRC72A6NJI9 287 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 EPPINO95925 133 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 ZNF888P0CJ79 500 aaPredicted RBP19.12■□□□□ 0.65
CLN3-230ENST00000568076 MAGP20916 626 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 MVKQ03426 396 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 CEBPEQ15744 281 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 TMEM236Q5W0B7 351 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 HMGN2P46Q86SG4 172 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 RASSF5Q8WWW0 418 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 GGHQ92820 318 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 GAL3ST3Q96A11 431 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 NECTIN4Q96NY8 510 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 ANKRA2Q9H9E1 313 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 FKBP14Q9NWM8 211 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 SELENONQ9NZV5 590 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 ACAD8Q9UKU7 415 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 KCNE3Q9Y6H6 103 aa19.12■□□□□ 0.65
CLN3-230ENST00000568076 SERPINB7O75635 380 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 LCKP06239 509 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 CSNK2A2P19784 350 aaPredicted RBP19.11■□□□□ 0.65
CLN3-230ENST00000568076 CHMP24386 653 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 PSMB9P28065 219 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 C21orf33P30042 268 aaPredicted RBP19.11■□□□□ 0.65
CLN3-230ENST00000568076 NUDT6P53370 316 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 DGCR6Q14129 220 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 LEXMQ3ZCV2 418 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 AP1ARQ63HQ0 302 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 ASPGQ86U10 573 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 SLC44A3Q8N4M1 653 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 NT5CQ8TCD5 201 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 COPS4Q9BT78 406 aa19.11■□□□□ 0.65
CLN3-230ENST00000568076 ZAR1LA6NP61 321 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 C2CD4DB7Z1M9 353 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 M0R3H8 397 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 CTSVO60911 334 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 UGT2B7P16662 529 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 DGKEP52429 567 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 CRISP3P54108 245 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 GPR18Q14330 331 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 KIR2DS3Q14952 304 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 EOGTQ5NDL2 527 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 Q6ZSR6 202 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 DEPDC4Q8N2C3 294 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 OR9A2Q8NGT5 310 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 SLC22A18Q96BI1 424 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 C10orf90Q96M02 699 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 OR2A5Q96R48 311 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 FUZQ9BT04 418 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 PLGRKTQ9HBL7 147 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 BCL2L10Q9HD36 194 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 DSPPQ9NZW4 1301 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 BRWD1Q9NSI6 2320 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 CLCA1A8K7I4 914 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 C10orf142B7Z368 130 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 P2RX6O15547 441 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 FHP07954 510 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 PPP2R1BP30154 601 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 AKT2P31751 481 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 MC3RP41968 323 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 CRISP1P54107 249 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms