RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 KPNA3O00505 521 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 TCEA1P23193 301 aaKnown RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 VIPR1P32241 457 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 KIR2DL1P43626 348 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 PREPP48147 710 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 SNRPGP62308 76 aaKnown RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 TP53BP2Q13625 1128 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 ELAVL3Q14576 367 aaKnown RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 BCL7AQ4VC05 210 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 ZNF805Q5CZA5 627 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 MEDAGQ5VYS4 303 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 ZNF770Q6IQ21 691 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 TMPRSS11BQ86T26 416 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 OR6F1Q8NGZ6 308 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 FOXJ1Q92949 421 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 OPALINQ96PE5 141 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 OR2A14Q96R47 310 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 CNPPD1Q9BV87 410 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 MYNNQ9NPC7 610 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 FZD3Q9NPG1 666 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 CCDC177Q9NQR7 707 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 PRDM6Q9NQX0 595 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 GULP1Q9UBP9 304 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 KCND3Q9UK17 655 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 TBC1D24Q9ULP9 559 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 PCDHGB2Q9Y5G2 931 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 CAPN5O15484 640 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 ADAP00813 363 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 EGFP01133 1207 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 GBAP04062 536 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 TIMP2P16035 220 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 PSMA1P25786 263 aaKnown RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 POU1F1P28069 291 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 RPS19P39019 145 aaKnown RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 MC1RQ01726 317 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 MPEG1Q2M385 716 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 LEXMQ3ZCV2 418 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 CDONQ4KMG0 1287 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 C2orf27AQ580R0 203 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 ZNF648Q5T619 568 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 HENMT1Q5T8I9 393 aaKnown RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 FAM71E1Q6IPT2 247 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 NUDT18Q6ZVK8 323 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 PARS2Q7L3T8 475 aaKnown RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 CACUL1Q86Y37 369 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 LAS2Q8IYD9 372 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 Q8N9G6 341 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 LILRB4Q8NHJ6 448 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 C16orf78Q8WTQ4 265 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 BTN2A2Q8WVV5 523 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 KLHL6Q8WZ60 621 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 OR8D1Q8WZ84 308 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 WDR34Q96EX3 536 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 SNX18Q96RF0 628 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 DHRS9Q9BPW9 319 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 EFCAB11Q9BUY7 163 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 RIOK2Q9BVS4 552 aaKnown RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 HHATLQ9HCP6 504 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 EXOSC4Q9NPD3 245 aaKnown RBP12.56□□□□□ -0.4
VPS4A-204ENST00000566354 PRSS16Q9NQE7 514 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 MKL2Q9ULH7 1088 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 CKAP5Q14008 2032 aa12.56□□□□□ -0.4
VPS4A-204ENST00000566354 ARPC4-TTLL3A0A0A6YYG9 625 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 A0A1W2PRB8 838 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 FAM172BPA6NC97 362 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 TLR4O00206 839 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 RGS5O15539 181 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 SSX4O60224 188 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 ENTPD6O75354 484 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 RORCP51449 518 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 CTSCP53634 463 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 CHRNEQ04844 493 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 NCF4Q15080 339 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 C4orf46Q504U0 113 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 NRARPQ7Z6K4 114 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 RASGEF1AQ8N9B8 481 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 OR5AK3PQ8NH89 298 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 LRIG1Q96JA1 1093 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 TRIM39Q9HCM9 518 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 DMRT3Q9NQL9 472 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 NFKBIL1Q9UBC1 381 aaPredicted RBP12.55□□□□□ -0.4
VPS4A-204ENST00000566354 RHCGQ9UBD6 479 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 SEC14L4Q9UDX3 406 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 NDOR1Q9UHB4 597 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 LSM2Q9Y333 95 aaKnown RBP12.55□□□□□ -0.4
VPS4A-204ENST00000566354 PCM1Q15154 2024 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 TSPAN11A1L157 253 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 CRYZL1O95825 349 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 PRNPP04156 253 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 OSMP13725 252 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 NPPBP16860 134 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 PRLHRP49683 370 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 TAS2R50P59544 299 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 ILKQ13418 452 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 GPR50Q13585 617 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 ENPP2Q13822 863 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 SPHARQ15513 63 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 DUSP7Q16829 419 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 ZNF284Q2VY69 593 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 HIST2H2AA3Q6FI13 130 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms