RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PSME2Q9UL46 239 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 HRH3Q9Y5N1 445 aa19.13■□□□□ 0.65
CLN3-219ENST00000565778 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.13■□□□□ 0.65
CLN3-219ENST00000565778 A0A1W2PPM1 405 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 ADAM10O14672 748 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 ERAL1O75616 437 aaKnown RBP19.12■□□□□ 0.65
CLN3-219ENST00000565778 GLSO94925 669 aaPredicted RBP19.12■□□□□ 0.65
CLN3-219ENST00000565778 CLDN14O95500 239 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 CT62P0C5K7 136 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 CPMP14384 443 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 GALNT1Q10472 559 aaPredicted RBP19.12■□□□□ 0.65
CLN3-219ENST00000565778 TBL3Q12788 808 aaKnown RBP19.12■□□□□ 0.65
CLN3-219ENST00000565778 SLC10A1Q14973 349 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 EBPQ15125 230 aaKnown RBP19.12■□□□□ 0.65
CLN3-219ENST00000565778 TCHHL1Q5QJ38 904 aaPredicted RBP19.12■□□□□ 0.65
CLN3-219ENST00000565778 FAM219BQ5XKK7 198 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 SLC48A1Q6P1K1 146 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 LYPD8Q6UX82 237 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 DND1Q8IYX4 353 aaKnown RBP19.12■□□□□ 0.65
CLN3-219ENST00000565778 TMEM251Q8N6I4 163 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 OR5M3Q8NGP4 307 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 PAQR8Q8TEZ7 354 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 PHF10Q8WUB8 498 aaKnown RBP19.12■□□□□ 0.65
CLN3-219ENST00000565778 UBLCP1Q8WVY7 318 aaPredicted RBP19.12■□□□□ 0.65
CLN3-219ENST00000565778 DMRTA2Q96SC8 542 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 ZNF382Q96SR6 550 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 OR10A5Q9H207 317 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 ZDHHC11Q9H8X9 412 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 TUBA8Q9NY65 449 aaPredicted RBP19.12■□□□□ 0.65
CLN3-219ENST00000565778 CNIH4Q9P003 139 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 CRYBG3Q68DQ2 2970 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 CELSR2Q9HCU4 2923 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 CACNA1DQ01668 2161 aa19.12■□□□□ 0.65
CLN3-219ENST00000565778 ATP6AP2A0A1C7CYW4 349 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 GOLGA6L10A6NI86 522 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 NPIPA2E9PIF3 369 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 NPIPA3F8WFD2 350 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 ATP6AP2O75787 350 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 CLPSP04118 112 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 FBXO45P0C2W1 286 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 HSD3B1P14060 373 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 HSD3B2P26439 372 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 FEN1P39748 380 aaKnown RBP19.11■□□□□ 0.65
CLN3-219ENST00000565778 MAGEA5P43359 124 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 ALDH9A1P49189 494 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 KCNJ2P63252 427 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 FUT7Q11130 342 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 FOXO1Q12778 655 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 GTF3C1Q12789 2109 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 PRAMEF20Q5VT98 475 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 TMEM211Q6ICI0 200 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 FAM109AQ8N4B1 249 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 EIF1ADQ8N9N8 165 aaKnown RBP19.11■□□□□ 0.65
CLN3-219ENST00000565778 CHTF18Q8WVB6 975 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 TP53INP1Q96A56 240 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 FAIM2Q9BWQ8 316 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 LDAHQ9H6V9 325 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 RYDENQ9NUL5 291 aaKnown RBP19.11■□□□□ 0.65
CLN3-219ENST00000565778 COQ3Q9NZJ6 369 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 CES1P1Q9UKY3 287 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 STK38LQ9Y2H1 464 aa19.11■□□□□ 0.65
CLN3-219ENST00000565778 CAPN14A8MX76 684 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 FOXO6A8MYZ6 492 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 ESRRBO95718 433 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 SNRPB2P08579 225 aaKnown RBP19.1■□□□□ 0.65
CLN3-219ENST00000565778 CHN1P15882 459 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 PKNOX1P55347 436 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 TRA2BP62995 288 aaKnown RBP19.1■□□□□ 0.65
CLN3-219ENST00000565778 CSTF3Q12996 717 aaKnown RBP19.1■□□□□ 0.65
CLN3-219ENST00000565778 CDSNQ15517 529 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 GXYLT1Q4G148 440 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 TMEM64Q6YI46 380 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 MMP21Q8N119 569 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 CCNYL1Q8N7R7 359 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 ZNF615Q8N8J6 731 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 OR10G3Q8NGC4 313 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 MZB1Q8WU39 189 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 SDCCAG3Q96C92 435 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 CCDC126Q96EE4 140 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 L3HYPDHQ96EM0 354 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 BRINP2Q9C0B6 783 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 TP63Q9H3D4 680 aaPredicted RBP19.1■□□□□ 0.65
CLN3-219ENST00000565778 EXO5Q9H790 373 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 SH2D2AQ9NP31 389 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 TIMM22Q9Y584 194 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 ZNF780BQ9Y6R6 833 aa19.1■□□□□ 0.65
CLN3-219ENST00000565778 NOTCH2Q04721 2471 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 CCDC151A5D8V7 595 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 SHBGP04278 402 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 MYL2P10916 166 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 COX6B1P14854 86 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 KRT15P19012 456 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 CSNK2A2P19784 350 aaPredicted RBP19.09■□□□□ 0.65
CLN3-219ENST00000565778 SLCO1A2P46721 670 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 LCP2Q13094 533 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 HYAL4Q2M3T9 481 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 FAM111BQ6SJ93 734 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 MCEMP1Q8IX19 187 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 FBXW8Q8N3Y1 598 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 GBP7Q8N8V2 638 aaPredicted RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms