RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 NXNQ6DKJ4 435 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 IKBIPQ70UQ0 350 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 ZNF551Q7Z340 670 aaPredicted RBP9.11□□□□□ -0.95
CLK3-208ENST00000562626 C9orf40Q8IXQ3 194 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 OR9I1Q8NGQ6 314 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 OR14A16Q8NHC5 309 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 THAP3Q8WTV1 239 aaPredicted RBP9.11□□□□□ -0.95
CLK3-208ENST00000562626 KAT2AQ92830 837 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 ABHD17AQ96GS6 310 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 FER1L6-AS2Q96M78 137 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 FAIM2Q9BWQ8 316 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 TRIM4Q9C037 500 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 GLIPR2Q9H4G4 154 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 MMP25Q9NPA2 562 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 TAS2R7Q9NYW3 318 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 NOP53Q9NZM5 478 aaKnown RBP9.11□□□□□ -0.95
CLK3-208ENST00000562626 EHD3Q9NZN3 535 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 ATP6V1HQ9UI12 483 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 ZNF639Q9UID6 485 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 EIF3LQ9Y262 564 aaKnown RBP9.11□□□□□ -0.95
CLK3-208ENST00000562626 TP53TG5Q9Y2B4 290 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 COL6A6A6NMZ7 2263 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 USP9XQ93008 2570 aaPredicted RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 TRBV11-1A0A0K0K1C0 115 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 SLCO1B7G3V0H7 640 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 PCDH17O14917 1159 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 POLR3GO15318 223 aaPredicted RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 OR10H2O60403 315 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 TBX19O60806 448 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 VPS4BO75351 444 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 CBX7O95931 251 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 ATP1B1P05026 303 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 VIMP08670 466 aaKnown RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 PCSK2P16519 638 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 TNNI3P19429 210 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 CSNK2A2P19784 350 aaPredicted RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 NT5EP21589 574 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 MAPK1P28482 360 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 FRKP42685 505 aaPredicted RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 GSTM5P46439 218 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 CDK9P50750 372 aaKnown RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 C21orf58P58505 322 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 KCNAB2Q13303 367 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 MYBPC3Q14896 1274 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 TERF2Q15554 542 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 SPRED3Q2MJR0 410 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 FHL5Q5TD97 284 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 ZNF468Q5VIY5 522 aaPredicted RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 H3F3CQ6NXT2 135 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 KBTBD2Q8IY47 623 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 KIRREL3Q8IZU9 778 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 LRRC25Q8N386 305 aaPredicted RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 CLEC1AQ8NC01 280 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 OR7G2Q8NG99 324 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 OR1N1Q8NGS0 311 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 M1APQ8TC57 530 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 RIT1Q92963 219 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 PPCDCQ96CD2 204 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 CTHRC1Q96CG8 243 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 VMP1Q96GC9 406 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 RBM18Q96H35 190 aaKnown RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 SENP5Q96HI0 755 aaPredicted RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 FBXL20Q96IG2 436 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 AMDHD1Q96NU7 426 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 CNPPD1Q9BV87 410 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 TMEM120AQ9BXJ8 343 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 BRINP2Q9C0B6 783 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 LHPPQ9H008 270 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 RABEP2Q9H5N1 569 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 ZNF385DQ9H6B1 395 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 TCF7L2Q9NQB0 619 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 MIEF1Q9NQG6 463 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 ZNF71Q9NQZ8 489 aaPredicted RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 SIRT3Q9NTG7 399 aaPredicted RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 SH3BP4Q9P0V3 963 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 PTGFRNQ9P2B2 879 aa9.1□□□□□ -0.95
CLK3-208ENST00000562626 SMG1Q96Q15 3661 aaKnown RBP9.1□□□□□ -0.95
CLK3-208ENST00000562626 HEATR5AQ86XA9 2040 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 A0A0G2JND7 137 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 A8MUI8 341 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 PDPK1O15530 556 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 SCN2BO60939 215 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 TGDSO95455 350 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 COX7A2P14406 83 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 LSP1P33241 339 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 MC3RP41968 323 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 ASMTP46597 345 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 NCBP2P52298 156 aaKnown RBP eCLIP9.09□□□□□ -0.95
CLK3-208ENST00000562626 DGKQP52824 942 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 SLC37A1P57057 533 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 RHDQ02161 417 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 FUT7Q11130 342 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 EXT1Q16394 746 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 SPANXN4Q5MJ08 99 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 OR4F3Q6IEY1 312 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 TCTN3Q6NUS6 607 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 PAOXQ6QHF9 649 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 TMEM107Q6UX40 140 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 LINC00696Q6ZRV3 163 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 SPATA19Q7Z5L4 167 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms