RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MICAQ29983 383 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 IQCCQ4KMZ1 466 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 ARMC12Q5T9G4 340 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 CNIH2Q6PI25 160 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 GPRIN3Q6ZVF9 776 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 C9orf43Q8TAL5 461 aaPredicted RBP12.64□□□□□ -0.39
CLK3-206ENST00000562078 FEVQ99581 238 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 SPOCK3Q9BQ16 436 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 PELOQ9BRX2 385 aaKnown RBP12.64□□□□□ -0.39
CLK3-206ENST00000562078 SARS2Q9NP81 518 aaKnown RBP12.64□□□□□ -0.39
CLK3-206ENST00000562078 HCFC1R1Q9NWW0 138 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 IL17CQ9P0M4 197 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 COPZ2Q9P299 210 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 COMMD3Q9UBI1 195 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 SESN1Q9Y6P5 492 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 ATG2AQ2TAZ0 1938 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 FAM74A7A6NL05 159 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 IFRD1O00458 451 aaPredicted RBP12.64□□□□□ -0.39
CLK3-206ENST00000562078 SIGLEC5O15389 551 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 MMP20O60882 483 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 APOC1P02654 83 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 ESR1P03372 595 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 ANXA3P12429 323 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 SRCP12931 536 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 CD70P32970 193 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 MEOX2P50222 304 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLK3-206ENST00000562078 SIGLEC14Q08ET2 396 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 LMAN2Q12907 356 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 CSTF3Q12996 717 aaKnown RBP12.64□□□□□ -0.39
CLK3-206ENST00000562078 SLC14A1Q13336 389 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 FAM74A3Q4VXF1 159 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 ZNF628Q5EBL2 1059 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 ZNF57Q68EA5 555 aaPredicted RBP12.64□□□□□ -0.39
CLK3-206ENST00000562078 ANKRD46Q86W74 232 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 CDH26Q8IXH8 852 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 STAG3L4Q8TBR4 150 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 TMEM203Q969S6 136 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 KIAA1143Q96AT1 154 aaPredicted RBP12.64□□□□□ -0.39
CLK3-206ENST00000562078 CREB3L1Q96BA8 519 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 COQ10AQ96MF6 247 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 TMEM43Q9BTV4 400 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 FAM126AQ9BYI3 521 aaPredicted RBP12.64□□□□□ -0.39
CLK3-206ENST00000562078 TINAGL1Q9GZM7 467 aaPredicted RBP12.64□□□□□ -0.39
CLK3-206ENST00000562078 PPP1R3EQ9H7J1 279 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 FOLH1BQ9HBA9 442 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 EMC7Q9NPA0 242 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 RLIMQ9NVW2 624 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 TMEM45AQ9NWC5 275 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 HCN3Q9P1Z3 774 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 TINAGQ9UJW2 476 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 STUB1Q9UNE7 303 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 DUSP12Q9UNI6 340 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 PADI2Q9Y2J8 665 aa12.64□□□□□ -0.39
CLK3-206ENST00000562078 NOTCH4Q99466 2003 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 HYKKA2RU49 373 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 IQCF5A8MTL0 148 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 KRBOX1C9JBD0 128 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 H7C0S8 307 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 TRIM23P36406 574 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 INPP1P49441 399 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 VSX2P58304 361 aaPredicted RBP12.63□□□□□ -0.39
CLK3-206ENST00000562078 ERVPABLB-1P60509 514 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 RPL38P63173 70 aaKnown RBP12.63□□□□□ -0.39
CLK3-206ENST00000562078 ABRQ12979 859 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 IL18Q14116 193 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 UGT8Q16880 541 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 MPP7Q5T2T1 576 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 ATG9BQ674R7 924 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 C22orf42Q6IC83 251 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 FAM151BQ6UXP7 276 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 RRM2BQ7LG56 351 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 PDZD3Q86UT5 571 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 TMEM132CQ8N3T6 1108 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 OR4F6Q8NGB9 312 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 CD200R1Q8TD46 325 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 PIH1D2Q8WWB5 315 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 FUBP1Q96AE4 644 aaKnown RBP12.63□□□□□ -0.39
CLK3-206ENST00000562078 LINGO1Q96FE5 620 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 HSH2DQ96JZ2 352 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 CPPED1Q9BRF8 314 aaPredicted RBP12.63□□□□□ -0.39
CLK3-206ENST00000562078 PBX4Q9BYU1 374 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 BCL2L14Q9BZR8 327 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 NKX2-4Q9H2Z4 354 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 EIF2B4Q9UI10 523 aaKnown RBP12.63□□□□□ -0.39
CLK3-206ENST00000562078 KIF25Q9UIL4 384 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 TSR3Q9UJK0 312 aaKnown RBP12.63□□□□□ -0.39
CLK3-206ENST00000562078 PCOLCE2Q9UKZ9 415 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 MGAT4BQ9UQ53 548 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 NUP214P35658 2090 aaPredicted RBP12.63□□□□□ -0.39
CLK3-206ENST00000562078 TRAV6A0A075B6T7 132 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 POM121CA8CG34 1229 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 M0R233 179 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 SSX5O60225 188 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 TOXO94900 526 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 HK1P19367 917 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 ITGB7P26010 798 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 STOMP27105 288 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 SDC2P34741 201 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 SLC7A9P82251 487 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms