RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 SMURF2Q9HAU4 748 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 CLK4Q9HAZ1 481 aaKnown RBP12.13□□□□□ -0.47
SNX1-211ENST00000560829 PDE7BQ9NP56 450 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 PNPLA3Q9NST1 481 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 STARD5Q9NSY2 213 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 PTGFRNQ9P2B2 879 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 PILRBQ9UKJ0 227 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 IGHV5-51A0A0C4DH38 117 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 FITM1A5D6W6 292 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 SMNDC1O75940 238 aaKnown RBP eCLIP12.12□□□□□ -0.47
SNX1-211ENST00000560829 DIRAS1O95057 198 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 ZBTB11O95625 1053 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 GPR75O95800 540 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 ALBP02768 609 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 ATP1B1P05026 303 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 PORP16435 677 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 ITGA2P17301 1181 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 CD247P20963 164 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 PPP2R1BP30154 601 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 PTGER1P34995 402 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 MLLT3P42568 568 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 PRKAG1P54619 331 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 EMP3P54852 163 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 GPLD1P80108 840 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 SHC2P98077 582 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 GNA13Q14344 377 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 LASP1Q14847 261 aaKnown RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 LTB4RQ15722 352 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 RFX4Q33E94 735 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 PLK5Q496M5 336 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 RPS26P11Q5JNZ5 115 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 TCTE1Q5JU00 501 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 PEAR1Q5VY43 1037 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 KRT80Q6KB66 452 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 KANSL1Q7Z3B3 1105 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 SZRD1Q7Z422 152 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 TMEM52Q8NDY8 209 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 OR9A4Q8NGU2 314 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 BBS10Q8TAM1 723 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 XAGE5Q8WWM1 108 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 RASSF5Q8WWW0 418 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 NCSTNQ92542 709 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 MAGED4Q96JG8 741 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 ZNF300Q96RE9 604 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 ZNF607Q96SK3 696 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 EPYCQ99645 322 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 TREX2Q9BQ50 279 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 REEP1Q9H902 201 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 SEMA5BQ9P283 1151 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 PCDHGB3Q9Y5G1 929 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 GPC6Q9Y625 555 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 U3KQV3 271 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 COL6A3P12111 3177 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 SGK494L7N484 410 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 ADAMDEC1O15204 470 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 FOXS1O43638 330 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 SLC28A2O43868 658 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 FGF17O60258 216 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 RDH16O75452 317 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 DNAJB5O75953 348 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 NSA2O95478 260 aaKnown RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 RECKO95980 971 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 GNAO1P09471 354 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 EPHA8P29322 1005 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 ALDH4A1P30038 563 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 SOX18P35713 384 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 CRISP3P54108 245 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 KCNC4Q03721 635 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 FUT5Q11128 374 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 PPP1R8Q12972 351 aaKnown RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 SRSF5Q13243 272 aaKnown RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 SYPL1Q16563 259 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 DUSP7Q16829 419 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 ZNF628Q5EBL2 1059 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 CEP68Q76N32 757 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 ST13P4Q8IZP2 240 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 TTC29Q8NA56 475 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 SMYD1Q8NB12 490 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 OR7G2Q8NG99 324 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 ADAMTS18Q8TE60 1221 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 CYGBQ8WWM9 190 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 MS4A4EQ96PG1 132 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 BTBD2Q9BX70 525 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 DDX18Q9NVP1 670 aaKnown RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 TRPC4Q9UBN4 977 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 TMEFF2Q9UIK5 374 aaPredicted RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 C3orf18Q9UK00 162 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 SAMHD1Q9Y3Z3 626 aaKnown RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 MDC1Q14676 2089 aaKnown RBP12.12□□□□□ -0.47
SNX1-211ENST00000560829 EML5Q05BV3 1969 aa12.12□□□□□ -0.47
SNX1-211ENST00000560829 MN1Q10571 1320 aaPredicted RBP12.11□□□□□ -0.47
SNX1-211ENST00000560829 A0A087WV62 115 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 A0A1B0GTQ1 180 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 BLACEA4D250 179 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 CHST10O43529 356 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 DUX1O43812 170 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 SERPINB7O75635 380 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 MED26O95402 600 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 NR2F1P10589 423 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 ETS2P15036 469 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms