RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 TSPYL5Q86VY4 417 aaPredicted RBP4.9□□□□□ -1.63
SPG11-220ENST00000559933 LSRQ86X29 649 aaPredicted RBP4.9□□□□□ -1.63
SPG11-220ENST00000559933 ZC3H7AQ8IWR0 971 aaKnown RBP4.9□□□□□ -1.63
SPG11-220ENST00000559933 RIMKLAQ8IXN7 391 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 GPR135Q8IZ08 494 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 KIRREL3Q8IZU9 778 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 CARFQ8N187 725 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 TMEM132CQ8N3T6 1108 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 ZCCHC7Q8N3Z6 543 aaKnown RBP4.9□□□□□ -1.63
SPG11-220ENST00000559933 ANKS4BQ8N8V4 417 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 SIMC1Q8NDZ2 872 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 OR5AK3PQ8NH89 298 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.9□□□□□ -1.63
SPG11-220ENST00000559933 STON2Q8WXE9 905 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 MIEF2Q96C03 454 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 CLIP3Q96DZ5 547 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 OTUB1Q96FW1 271 aaPredicted RBP4.9□□□□□ -1.63
SPG11-220ENST00000559933 AURKBQ96GD4 344 aaPredicted RBP4.9□□□□□ -1.63
SPG11-220ENST00000559933 Q96M66 194 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 GBP5Q96PP8 586 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 DEPDC7Q96QD5 511 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 LRRC37BQ96QE4 947 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 SERINC2Q96SA4 455 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 CMKLR1Q99788 373 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 DPYSL5Q9BPU6 564 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 CENPKQ9BS16 269 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 TBCDQ9BTW9 1192 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 NDC1Q9BTX1 674 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 NLNQ9BYT8 704 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 ULBP3Q9BZM4 244 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 SLC7A5P2Q9GIP4 190 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 CHRNA10Q9GZZ6 450 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 CLMPQ9H6B4 373 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 FANCEQ9HB96 536 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 NECTIN3Q9NQS3 549 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 TXLNGQ9NUQ3 528 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 SH3BP4Q9P0V3 963 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 KLK13Q9UKR3 277 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 DAPP1Q9UN19 280 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 ERVK-11Q9UQG0 969 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 TMED5Q9Y3A6 229 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 PCDHGA1Q9Y5H4 931 aa4.9□□□□□ -1.63
SPG11-220ENST00000559933 CCDC187A0A096LP49 1063 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 IGHV3-20A0A0C4DH32 117 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 FAM234BA2RU67 622 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 URADA6NGE7 173 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 CCDC154A6NI56 674 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 GABRR3A8MPY1 467 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 A8MUA0 341 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 FXYD1O00168 92 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 HRKO00198 91 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 CYR61O00622 381 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 AIM2O14862 343 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 PLD2O14939 933 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 PROM1O43490 865 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 FOXD2O60548 495 aaPredicted RBP4.89□□□□□ -1.63
SPG11-220ENST00000559933 CCDC22O60826 627 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 STK17BO94768 372 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 TNFSF15O95150 251 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 NSA2O95478 260 aaKnown RBP4.89□□□□□ -1.63
SPG11-220ENST00000559933 CPSF4O95639 269 aaKnown RBP4.89□□□□□ -1.63
SPG11-220ENST00000559933 C6orf47O95873 294 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 GSNP06396 782 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 ABCB1P08183 1280 aaPredicted RBP4.89□□□□□ -1.63
SPG11-220ENST00000559933 CT62P0C5K7 136 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 MSL3P1P0C860 447 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 PRPS2P11908 318 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 CEACAM1P13688 526 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 DDCP20711 480 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 JAK1P23458 1154 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 SOAT1P35610 550 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 HPCAL1P37235 193 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 AVPR1BP47901 424 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 NUDT2P50583 147 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 CLDN8P56748 225 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 RNF4P78317 190 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 SLC25A3Q00325 362 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 FOLH1Q04609 750 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 HSPB3Q12988 150 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 MAD2L1Q13257 205 aaPredicted RBP4.89□□□□□ -1.63
SPG11-220ENST00000559933 PDE7AQ13946 482 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 CYLC2Q14093 348 aaPredicted RBP4.89□□□□□ -1.63
SPG11-220ENST00000559933 RCAN2Q14206 197 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 SELPLGQ14242 412 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 HERC3Q15034 1050 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 CLPPQ16740 277 aaPredicted RBP4.89□□□□□ -1.63
SPG11-220ENST00000559933 NDUFA9Q16795 377 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 MINDY4Q4G0A6 757 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 NKAIN1Q4KMZ8 207 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 C10orf62Q5T681 223 aaPredicted RBP4.89□□□□□ -1.63
SPG11-220ENST00000559933 MLIPQ5VWP3 458 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 RHBDD2Q6NTF9 364 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 SLC48A1Q6P1K1 146 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 TLDC1Q6P9B6 456 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 FAM198BQ6UWH4 519 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 LANCL3Q6ZV70 420 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 PAGE2Q7Z2X7 111 aa4.89□□□□□ -1.63
SPG11-220ENST00000559933 ZNF551Q7Z340 670 aaPredicted RBP4.89□□□□□ -1.63
SPG11-220ENST00000559933 WDR53Q7Z5U6 358 aaPredicted RBP4.89□□□□□ -1.63
SPG11-220ENST00000559933 MSRB3Q8IXL7 192 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms