RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 OR14I1A6ND48 311 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 VSTM5A8MXK1 200 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 E7ESA3 106 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 ERI3O43414 337 aaKnown RBP9.24□□□□□ -0.93
SCFD1-220ENST00000556486 GLSO94925 669 aaPredicted RBP9.24□□□□□ -0.93
SCFD1-220ENST00000556486 IGHG3P01860 377 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 GSNP06396 782 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 CD3EP07766 207 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 HNRNPFP52597 415 aaKnown RBP9.24□□□□□ -0.93
SCFD1-220ENST00000556486 WNT3P56703 355 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 TAS2R39P59534 338 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 PPIAP62937 165 aaKnown RBP9.24□□□□□ -0.93
SCFD1-220ENST00000556486 BTN3A2P78410 334 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 NKX6-1P78426 367 aaPredicted RBP9.24□□□□□ -0.93
SCFD1-220ENST00000556486 MGAT5Q09328 741 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 RCN2Q14257 317 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 EFTUD2Q15029 972 aaKnown RBP eCLIP9.24□□□□□ -0.931e-6■■■□□ 17.2
SCFD1-220ENST00000556486 RBBP5Q15291 538 aaKnown RBP9.24□□□□□ -0.93
SCFD1-220ENST00000556486 PCBP2Q15366 365 aaKnown RBP eCLIP9.24□□□□□ -0.93
SCFD1-220ENST00000556486 HYAL4Q2M3T9 481 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 TOR1AIP1Q5JTV8 583 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 B3GNT6Q6ZMB0 384 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 TCAIMQ8N3R3 496 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 TMEM132CQ8N3T6 1108 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 MORN4Q8NDC4 146 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 C7orf57Q8NEG2 295 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 SPATA3Q8NHX4 192 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 ANKRD49Q8WVL7 239 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 NCLNQ969V3 563 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 KIAA1191Q96A73 305 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 FAR2Q96K12 515 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 RUNDC3BQ96NL0 473 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 SERINC2Q96SA4 455 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 SMC6Q96SB8 1091 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 DERL2Q9GZP9 239 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 RHBGQ9H310 441 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 RHOJQ9H4E5 214 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 PRTFDC1Q9NRG1 225 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 NSMCE4AQ9NXX6 385 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 FBXW2Q9UKT8 454 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 DAPP1Q9UN19 280 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 CHMP2BQ9UQN3 213 aa9.24□□□□□ -0.93
SCFD1-220ENST00000556486 NCKAP5O14513 1909 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 ARHGAP21Q5T5U3 1957 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 A0A1B0GVC2 190 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 FAM95CA0A1B0GW59 222 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 NPEPPSL1A6NEC2 478 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 A8MVJ9 347 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 KDM4EB2RXH2 506 aaPredicted RBP9.23□□□□□ -0.93
SCFD1-220ENST00000556486 H7C1Q1 480 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 B3GALT2O43825 422 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 PRKNO60260 465 aaPredicted RBP9.23□□□□□ -0.93
SCFD1-220ENST00000556486 CTNSO60931 367 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 H2AFYO75367 372 aaKnown RBP9.23□□□□□ -0.93
SCFD1-220ENST00000556486 OR2J2O76002 312 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 WDR47O94967 919 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 SEC31AO94979 1220 aaKnown RBP9.23□□□□□ -0.93
SCFD1-220ENST00000556486 SCELO95171 688 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 TCP1P17987 556 aaKnown RBP9.23□□□□□ -0.93
SCFD1-220ENST00000556486 TACR1P25103 407 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 PPP2R1BP30154 601 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 MAGEA5P43359 124 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 MTTPP55157 894 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 LIM2P55344 173 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 SLC13A2Q13183 592 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 TGFBIQ15582 683 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 TSNQ15631 228 aaKnown RBP9.23□□□□□ -0.93
SCFD1-220ENST00000556486 TBCCQ15814 346 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 FLYWCH1Q4VC44 716 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 TMEM177Q53S58 311 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 XKR6Q5GH73 641 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 NDUFAF5Q5TEU4 345 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 CDPF1Q6NVV7 123 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 TRIM40Q6P9F5 258 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 PAOXQ6QHF9 649 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 CAMKMTQ7Z624 323 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 KRT78Q8N1N4 520 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 SLC35F6Q8N357 371 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 TMEM52Q8NDY8 209 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 MYRIPQ8NFW9 859 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 OR2M7Q8NG81 312 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 OR14A16Q8NHC5 309 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 DAZLQ92904 295 aaKnown RBP9.23□□□□□ -0.93
SCFD1-220ENST00000556486 MBD6Q96DN6 1003 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 VPS39Q96JC1 886 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 SGCZQ96LD1 299 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 RASL10BQ96S79 203 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 EGFL8Q99944 293 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 CCDC77Q9BR77 488 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 REXO4Q9GZR2 422 aaKnown RBP9.23□□□□□ -0.93
SCFD1-220ENST00000556486 CNOT10Q9H9A5 744 aaKnown RBP9.23□□□□□ -0.93
SCFD1-220ENST00000556486 LYRM4Q9HD34 91 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 HPF1Q9NWY4 346 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 CTNNAL1Q9UBT7 734 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 ERVK-11Q9UQG0 969 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 MXRA5Q9NR99 2828 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 MPDZO75970 2070 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 NBEAL1Q6ZS30 2694 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 TLN2Q9Y4G6 2542 aa9.23□□□□□ -0.93
SCFD1-220ENST00000556486 ATRQ13535 2644 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms