RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 CAB39LQ9H9S4 337 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 CALHM2Q9HA72 323 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 TEX10Q9NXF1 929 aaPredicted RBP8.29□□□□□ -1.08
SYNE2-209ENST00000553308 C6orf203Q9P0P8 240 aaPredicted RBP8.29□□□□□ -1.08
SYNE2-209ENST00000553308 IKBKGQ9Y6K9 419 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 A0A1W2PS29 197 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 GLOD5A6NK44 160 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 OR6C76A6NM76 312 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PLPP1O14494 284 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 TP53I11O14683 189 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 GNB5O14775 395 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PHGDHO43175 533 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 SIAH2O43255 324 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 OR10H2O60403 315 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PIAS1O75925 651 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 SNX4O95219 450 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 CYP4B1P13584 511 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 IVDP26440 423 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PTPN6P29350 595 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 CPOXP36551 454 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 CASP2P42575 452 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 RPL21P46778 160 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 RAP1GDS1P52306 607 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 MGAT5Q09328 741 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 LAPTM5Q13571 262 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 DDX39BQ13838 428 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 E2F2Q14209 437 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 TBCCQ15814 346 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 HIST2H2ACQ16777 129 aaPredicted RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 KHDRBS2Q5VWX1 349 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 HIST2H2AA3Q6FI13 130 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 OR4C11Q6IEV9 310 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 SULT1C3Q6IMI6 304 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 MED27Q6P2C8 311 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 YTHDF3Q7Z739 585 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 YRDCQ86U90 279 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 GPR180Q86V85 440 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PACS2Q86VP3 889 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 ANKMY2Q8IV38 441 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 LAS2Q8IYD9 372 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PRR22Q8IZ63 422 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 GCNT2Q8N0V5 402 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 TAGAPQ8N103 731 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PDIK1LQ8N165 341 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 LRRC75A-AS1Q8N1F1 130 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PDPRQ8NCN5 879 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 SIMC1Q8NDZ2 872 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 C7orf57Q8NEG2 295 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 FAM83FQ8NEG4 500 aaPredicted RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 SPATA3Q8NHX4 192 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 TANKQ92844 425 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 RIT1Q92963 219 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 EXT2Q93063 718 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 UCN3Q969E3 161 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 ISL2Q96A47 359 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 INTS12Q96CB8 462 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PERPQ96FX8 193 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PBKQ96KB5 322 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 NAP1L3Q99457 506 aaPredicted RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PIP5K1AQ99755 562 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 TUBA1CQ9BQE3 449 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PELOQ9BRX2 385 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 MCMBPQ9BTE3 642 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 BDH2Q9BUT1 245 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 SFXN3Q9BWM7 321 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 DDX47Q9H0S4 455 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 RHOJQ9H4E5 214 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 POPDC3Q9HBV1 291 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 MS4A12Q9NXJ0 267 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 CD274Q9NZQ7 290 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PHF11Q9UIL8 331 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 PTBP2Q9UKA9 531 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 EIF3LQ9Y262 564 aaKnown RBP8.28□□□□□ -1.08
SYNE2-209ENST00000553308 TESMINQ9Y4I5 508 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 NPFFR2Q9Y5X5 522 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 TEX264Q9Y6I9 313 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 EXPH5Q8NEV8 1989 aa8.28□□□□□ -1.08
SYNE2-209ENST00000553308 VPS13CQ709C8 3753 aa8.27□□□□□ -1.08
SYNE2-209ENST00000553308 JMJD1CQ15652 2540 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 GOLGA6L10A0A0M3HER8 536 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 C2orf92A0A1B0GVN3 265 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 DEFB108AA8MXU0 73 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 GOLGA6L6A8MZA4 724 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 H0Y3Z8 333 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 CASKO14936 926 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 TMPRSS11DO60235 418 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 GPR75O95800 540 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 CT62P0C5K7 136 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 CCDC166P0CW27 439 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 CD1DP15813 335 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 TLX1P31314 330 aaPredicted RBP8.27□□□□□ -1.09
SYNE2-209ENST00000553308 GMPRP36959 345 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 BUD31P41223 144 aaPredicted RBP8.27□□□□□ -1.09
SYNE2-209ENST00000553308 CASP3P42574 277 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 TMED10P49755 219 aaKnown RBP8.27□□□□□ -1.09
SYNE2-209ENST00000553308 PPP2R2BQ00005 443 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 SRYQ05066 204 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 BIKQ13323 160 aa8.27□□□□□ -1.09
SYNE2-209ENST00000553308 FRG1Q14331 258 aaKnown RBP8.27□□□□□ -1.09
SYNE2-209ENST00000553308 FASTKD3Q14CZ7 662 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms