RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TMEM175Q9BSA9 504 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 TMEM245Q9H330 911 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 SERHL2Q9H4I8 314 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 RNF121Q9H920 327 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 B3GAT2Q9NPZ5 323 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 TVP23BQ9NYZ1 205 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 TESQ9UGI8 421 aaKnown RBP5.14□□□□□ -1.59
LIMA1-212ENST00000552491 LRFN2Q9ULH4 789 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 ANGPT4Q9Y264 503 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 HS3ST2Q9Y278 367 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 RPL36Q9Y3U8 105 aaKnown RBP5.14□□□□□ -1.59
LIMA1-212ENST00000552491 SPIN1Q9Y657 262 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-212ENST00000552491 KCNE2Q9Y6J6 123 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 LRRK1Q38SD2 2015 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 A0A0C4DFX4 3053 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 NUP210Q8TEM1 1887 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 OR6C70A6NIJ9 312 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 DVL2O14641 736 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 C1orf105O95561 183 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 NTN1O95631 604 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 LALBAP00709 142 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 IL1AP01583 271 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CATP04040 527 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 TSPAN19P0C672 248 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CCNYL3P0C7X3 344 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SELPP16109 830 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CPEP16870 476 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ALAS2P22557 587 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SOX18P35713 384 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 RPL3P39023 403 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 HTR2BP41595 481 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 MLLT3P42568 568 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 GNG2P59768 71 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ARPC4P59998 168 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 WDR5P61964 334 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SNRPD2P62316 118 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 EFNB1P98172 346 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 TARDBPQ13148 414 aaKnown RBP eCLIP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 C1DQ13901 141 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 COL9A2Q14055 689 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 INSL4Q14641 139 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 HEPACAMQ14CZ8 416 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SYTL3Q4VX76 610 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SMUG1Q53HV7 270 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 PYDC2Q56P42 97 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 DCST1Q5T197 706 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 HENMT1Q5T8I9 393 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SYCE2Q6PIF2 218 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 TECPR1Q7Z6L1 1165 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ZER1Q7Z7L7 766 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SLC30A8Q8IWU4 369 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 C2orf73Q8N5S3 287 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CLDN22Q8N7P3 220 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 BMPERQ8N8U9 685 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF557Q8N988 423 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 OR8J1Q8NGP2 316 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 OR2A12Q8NGT7 310 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 GATAD2BQ8WXI9 593 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 TMEM159Q96B96 161 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SENP5Q96HI0 755 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 IGSF21Q96ID5 467 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CPEB1Q9BZB8 566 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 PLA2G12AQ9BZM1 189 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 POLR2J3Q9H1A7 115 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 PPP1R3EQ9H7J1 279 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 MYNNQ9NPC7 610 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 RPRD1BQ9NQG5 326 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 HCN2Q9UL51 889 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 TMCC3Q9ULS5 477 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 A4GNTQ9UNA3 340 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CLCA3PQ9Y6N3 262 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ANKDD1BA6NHY2 528 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ANHXE9PGG2 379 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 J3QL48 77 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 M0R3H8 397 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 FOXE1O00358 373 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 PRRG1O14668 218 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF197O14709 1029 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 MYL12BO14950 172 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF780AO75290 641 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 NCR1O76036 304 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 POP4O95707 220 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 EPPINO95925 133 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 URODP06132 367 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CKMP06732 381 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 H1F0P07305 194 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 C1GALT1C1LP0DN25 315 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 MMP11P24347 488 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 HLA-DMAP28067 261 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 GABRR2P28476 465 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 PTGER1P34995 402 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SLC9A3P48764 834 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 DGKGP49619 791 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 GZMKP49863 264 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 PNLIPRP1P54315 467 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 FABP5Q01469 135 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 BNC1Q01954 994 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 TAP2Q03519 686 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 FAPQ12884 760 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 GPR19Q15760 415 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms