RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SLC5A2P31639 672 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 CTBSQ01459 385 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 MOGQ16653 247 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 SPATC1Q76KD6 591 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 MMP21Q8N119 569 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 C9orf43Q8TAL5 461 aaPredicted RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 TESCQ96BS2 214 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 PTCHD1Q96NR3 888 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 NPLQ9BXD5 320 aaPredicted RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 ELL3Q9HB65 397 aaPredicted RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 Q9N2J8 555 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 MKKSQ9NPJ1 570 aaPredicted RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 ZNF225Q9UK10 706 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 C2orf92A0A1B0GVN3 265 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 A0A1W2PPK0 400 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 IRGMA1A4Y4 181 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 H3BMQ9 156 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 PCDH17O14917 1159 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 LDB3O75112 727 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 VNN2O95498 520 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 HMGN1P05114 100 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 ALPLP05186 524 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 THEGLP0DJG4 465 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 CLK3P49761 638 aaKnown RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 TCTN1Q2MV58 587 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 SERPINA11Q86U17 422 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 SLC9B2Q86UD5 537 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 AKAP14Q86UN6 197 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 C12orf40Q86WS4 652 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 ZNF420Q8TAQ5 688 aaPredicted RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 SMPDL3BQ92485 455 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 PEX11GQ96HA9 241 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 COG8Q96MW5 612 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 FAM83CQ9BQN1 747 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 TBL1XR1Q9BZK7 514 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 KLHL42Q9P2K6 505 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 MAN2B2Q9Y2E5 1009 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 MED31Q9Y3C7 131 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 C2orf74A8MZ97 194 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 FZD6O60353 706 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 CPNE3O75131 537 aaKnown RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 GSTM3P21266 225 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 BMP8BP34820 402 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 FCHO2Q0JRZ9 810 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 NDUFAF6Q330K2 333 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 CCNJQ5T5M9 372 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 BMP8AQ7Z5Y6 402 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 TSPYL5Q86VY4 417 aaPredicted RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 LRRC25Q8N386 305 aaPredicted RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 TMIEQ8NEW7 156 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 JSRP1Q96MG2 331 aaPredicted RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 TEX10Q9NXF1 929 aaPredicted RBP14.25□□□□□ -0.13
CUX1-214ENST00000550008 ZNF222Q9UK12 451 aa14.25□□□□□ -0.13
CUX1-214ENST00000550008 A0A1B0GVT2 93 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 NPPBP16860 134 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 ZNF12P17014 697 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 DDCP20711 480 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 BMXP51813 675 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 SLC27A4Q6P1M0 643 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 RNF111Q6ZNA4 994 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 ADGRD2Q7Z7M1 963 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.24□□□□□ -0.13
CUX1-214ENST00000550008 SPARTQ8N0X7 666 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 L3MBTL4Q8NA19 623 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 SAMD11Q96NU1 681 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 MAU2Q9Y6X3 613 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 ANTXRLA6NF34 631 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 SDC2P34741 201 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 GCGRP47871 477 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 RORCP51449 518 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 TUBA3CQ13748 450 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 Q6ZSR6 202 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 ASB18Q6ZVZ8 466 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 CHDHQ8NE62 594 aaPredicted RBP14.24□□□□□ -0.13
CUX1-214ENST00000550008 SLCO4A1Q96BD0 722 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 FAM46AQ96IP4 442 aaKnown RBP14.24□□□□□ -0.13
CUX1-214ENST00000550008 KCTD7Q96MP8 289 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 ASPNQ9BXN1 380 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 PAK6Q9NQU5 681 aaPredicted RBP14.24□□□□□ -0.13
CUX1-214ENST00000550008 COPS7AQ9UBW8 275 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 MRTO4Q9UKD2 239 aaKnown RBP14.24□□□□□ -0.13
CUX1-214ENST00000550008 RNASET2O00584 256 aaKnown RBP14.24□□□□□ -0.13
CUX1-214ENST00000550008 IDH3BO43837 385 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 ATE1O95260 518 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 ZNF888P0CJ79 500 aaPredicted RBP14.24□□□□□ -0.13
CUX1-214ENST00000550008 ACVR2AP27037 513 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 TMBIM6P55061 237 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 HHEXQ03014 270 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 RPA4Q13156 261 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 ZNF77Q15935 545 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 HENMT1Q5T8I9 393 aaKnown RBP14.24□□□□□ -0.13
CUX1-214ENST00000550008 GTF2IRD2BQ6EKJ0 949 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 METTL2BQ6P1Q9 378 aaKnown RBP14.24□□□□□ -0.13
CUX1-214ENST00000550008 GTF2IRD2Q86UP8 949 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 CENPSQ8N2Z9 138 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 HORMAD2Q8N7B1 307 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 TMEM80Q96HE8 168 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 ANKRA2Q9H9E1 313 aa14.24□□□□□ -0.13
CUX1-214ENST00000550008 C14orf119Q9NWQ9 140 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms