RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 GRM6O15303 877 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 SPDEFO95238 335 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 MRPL3P09001 348 aaKnown RBP13.58□□□□□ -0.24
LIMS1-215ENST00000544547 LAG3P18627 525 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF234Q14588 700 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF630Q2M218 657 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-215ENST00000544547 OTUD1Q5VV17 481 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-215ENST00000544547 FAM98AQ8NCA5 519 aaKnown RBP13.58□□□□□ -0.24
LIMS1-215ENST00000544547 PJA1Q8NG27 643 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 SLC5A11Q8WWX8 675 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 TRIB2Q92519 343 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 KCNN1Q92952 543 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 OR2A14Q96R47 310 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 EPYCQ99645 322 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 TMEM30AQ9NV96 361 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 KLHL21Q9UJP4 597 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 FKBP7Q9Y680 259 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 M0R082 166 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 COL9A2Q14055 689 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-215ENST00000544547 REEP3Q6NUK4 255 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 MOSPD2Q8NHP6 518 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 MCCC1Q96RQ3 725 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-215ENST00000544547 C11orf84Q9BUA3 381 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-215ENST00000544547 OR51I1Q9H343 314 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 PRDM9Q9NQV7 894 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 TXNL4BQ9NX01 149 aaKnown RBP13.58□□□□□ -0.24
LIMS1-215ENST00000544547 CSN2P05814 226 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 C8GP07360 202 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 CHMP24386 653 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 FAUP35544 74 aaKnown RBP13.58□□□□□ -0.24
LIMS1-215ENST00000544547 CDH4P55283 916 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF91Q05481 1191 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 DSG2Q14126 1118 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 SLBPQ14493 270 aaKnown RBP eCLIP13.58□□□□□ -0.24
LIMS1-215ENST00000544547 TOR1AIP1Q5JTV8 583 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 RAB12Q6IQ22 244 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 SLC30A8Q8IWU4 369 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 TTC9BQ8N6N2 239 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 LSMEM1Q8N8F7 131 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 SYT14Q8NB59 555 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 ZSWIM3Q96MP5 696 aa13.58□□□□□ -0.24
LIMS1-215ENST00000544547 SLC19A2O60779 497 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 HK1P19367 917 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 CRISP3P54108 245 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 WNT4P56705 351 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 RGS1Q08116 209 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 FAM198BQ6UWH4 519 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 SERPINA11Q86U17 422 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 THOC6Q86W42 341 aaKnown RBP13.57□□□□□ -0.24
LIMS1-215ENST00000544547 ARL14EPQ8N8R7 260 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-215ENST00000544547 P2RY13Q9BPV8 354 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 OSER1Q9NX31 292 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 SLC23A1Q9UHI7 598 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 OARD1Q9Y530 152 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 TRBV23OR9-2A0A075B6M9 112 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF879B4DU55 563 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 I6L893 689 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-215ENST00000544547 RAB3BP20337 219 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 HK3P52790 923 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 PSPHP78330 225 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 PIN1Q13526 163 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-215ENST00000544547 SAXO2Q658L1 398 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 LRRC70Q7Z2Q7 622 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 CEACAM19Q7Z692 300 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 TMED4Q7Z7H5 227 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 SCD5Q86SK9 330 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 PDZD9Q8IXQ8 264 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 METTL17Q9H7H0 456 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-215ENST00000544547 ARNT2Q9HBZ2 717 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 PHPT1Q9NRX4 125 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-215ENST00000544547 FBXL12Q9NXK8 326 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 STON1Q9Y6Q2 735 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 LRRN3E7EW58 273 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 OR7A17O14581 309 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 PROM1O43490 865 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 TFP02787 698 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 MTNR1AP48039 350 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 RPS26P11Q5JNZ5 115 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-215ENST00000544547 PAQR6Q6TCH4 344 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 C3P1Q6ZMU1 363 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 KANSL1Q7Z3B3 1105 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 SUSD3Q96L08 255 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 SYT17Q9BSW7 474 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 LMAN2LQ9H0V9 348 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 LRRN3Q9H3W5 708 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 ENPP4Q9Y6X5 453 aa13.57□□□□□ -0.24
LIMS1-215ENST00000544547 A0A1W2PPL8 197 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 UPK1AO00322 258 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 REM1O75628 298 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 ALPPL2P10696 532 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 RHCEP18577 417 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 KIR2DL3P43628 341 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 FGL2Q14314 439 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 CBX2Q14781 532 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-215ENST00000544547 XKR7Q5GH72 579 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 SLC36A4Q6YBV0 504 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 FRRS1Q6ZNA5 592 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 MDGA1Q8NFP4 955 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 NT5C3BQ969T7 300 aa13.56□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF471Q9BX82 626 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms