RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 ACSL3O95573 720 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 IGFBP2P18065 325 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 MSX1P28360 303 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 PIGAP37287 484 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 RPS6KA2Q15349 733 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 NTRK2Q16620 822 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 GGTA1PQ4G0N0 100 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 CDH24Q86UP0 819 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 TP53INP1Q96A56 240 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 PHF21BQ96EK2 531 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 ZNF597Q96LX8 424 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 FMO2Q99518 471 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 TTYH2Q9BSA4 534 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 DOHHQ9BU89 302 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 NTMT1Q9BV86 223 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 NMRK1Q9NWW6 199 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 XPR1Q9UBH6 696 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 PCTPQ9UKL6 214 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 HRH3Q9Y5N1 445 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 LIPGQ9Y5X9 500 aa12.09□□□□□ -0.47
RTN3-212ENST00000543123 PHF3Q92576 2039 aaKnown RBP12.09□□□□□ -0.47
RTN3-212ENST00000543123 ANKRD33BA6NCL7 494 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 NKX2-6A6NCS4 301 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 GOLGA6L10A6NI86 522 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 OR7A17O14581 309 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 CDH16O75309 829 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 TOXO94900 526 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 OTCP00480 354 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 MAGEA12P43365 314 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 ZFP36L2P47974 494 aaKnown RBP12.08□□□□□ -0.48
RTN3-212ENST00000543123 NEK2P51955 445 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 MAPK12P53778 367 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 TFF3Q07654 80 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 CCNYL2Q5T2Q4 361 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 C1orf185Q5T7R7 199 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 PRAMEF20Q5VT98 475 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 TMEM198Q66K66 360 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 DGAT2L6Q6ZPD8 337 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 CCDC71Q8IV32 467 aaPredicted RBP12.08□□□□□ -0.48
RTN3-212ENST00000543123 CNPY4Q8N129 248 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 LRRC25Q8N386 305 aaPredicted RBP12.08□□□□□ -0.48
RTN3-212ENST00000543123 RPRMLQ8N4K4 120 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 OR7G1Q8NGA0 311 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 OR10G3Q8NGC4 313 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 OR4K14Q8NGD5 310 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 OR52B6Q8NGF0 335 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 JSRP1Q96MG2 331 aaPredicted RBP12.08□□□□□ -0.48
RTN3-212ENST00000543123 CDK15Q96Q40 435 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 SECISBP2Q96T21 854 aaKnown RBP12.08□□□□□ -0.48
RTN3-212ENST00000543123 PAFAH2Q99487 392 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 MRPL57Q9BQC6 102 aaKnown RBP12.08□□□□□ -0.48
RTN3-212ENST00000543123 MRPL46Q9H2W6 279 aaKnown RBP12.08□□□□□ -0.48
RTN3-212ENST00000543123 CDC42EP4Q9H3Q1 356 aaKnown RBP12.08□□□□□ -0.48
RTN3-212ENST00000543123 CXorf21Q9HAI6 301 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 ACKR4Q9NPB9 350 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 KCNN3Q9UGI6 736 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 ZNF180Q9UJW8 692 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 CFL2Q9Y281 166 aa12.08□□□□□ -0.48
RTN3-212ENST00000543123 CHCHD2Q9Y6H1 151 aaPredicted RBP12.08□□□□□ -0.48
RTN3-212ENST00000543123 TEP1Q99973 2627 aaKnown RBP12.08□□□□□ -0.48
RTN3-212ENST00000543123 SNX4O95219 450 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 GBAP04062 536 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 KLK1P06870 262 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 CELA3AP09093 270 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 GLI4P10075 376 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 KRT15P19012 456 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 GDF1P27539 372 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 PEX19P40855 299 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 TRAF3Q13114 568 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 SF3B4Q15427 424 aaKnown RBP eCLIP12.07□□□□□ -0.48
RTN3-212ENST00000543123 SLC25A35Q3KQZ1 300 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 GLE1Q53GS7 698 aaKnown RBP12.07□□□□□ -0.48
RTN3-212ENST00000543123 LGSNQ5TDP6 509 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 LYPD8Q6UX82 237 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 MILR1Q7Z6M3 343 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 DMRTC2Q8IXT2 367 aaPredicted RBP12.07□□□□□ -0.48
RTN3-212ENST00000543123 PLD6Q8N2A8 252 aaKnown RBP12.07□□□□□ -0.48
RTN3-212ENST00000543123 C17orf47Q8NEP4 570 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 NEIL3Q8TAT5 605 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 TRPC4APQ8TEL6 797 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 IFT81Q8WYA0 676 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 DIO2Q92813 273 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 LRRC46Q96FV0 321 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 C16orf45Q96MC5 204 aaPredicted RBP12.07□□□□□ -0.48
RTN3-212ENST00000543123 ZNF559Q9BR84 538 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 UCK2Q9BZX2 261 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 BRF2Q9HAW0 419 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 SEMA4BQ9NPR2 832 aaPredicted RBP12.07□□□□□ -0.48
RTN3-212ENST00000543123 NPDC1Q9NQX5 325 aaPredicted RBP12.07□□□□□ -0.48
RTN3-212ENST00000543123 CNOT11Q9UKZ1 510 aaKnown RBP12.07□□□□□ -0.48
RTN3-212ENST00000543123 PSME2Q9UL46 239 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 SNX6Q9UNH7 406 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 FAM215AQ9Y5M1 114 aa12.07□□□□□ -0.48
RTN3-212ENST00000543123 A0A087WUV0 522 aaPredicted RBP12.06□□□□□ -0.48
RTN3-212ENST00000543123 C1orf226A1L170 272 aa12.06□□□□□ -0.48
RTN3-212ENST00000543123 LRRC3CA6NJW4 275 aa12.06□□□□□ -0.48
RTN3-212ENST00000543123 HAX1O00165 279 aa12.06□□□□□ -0.48
RTN3-212ENST00000543123 PGRMC2O15173 223 aa12.06□□□□□ -0.48
RTN3-212ENST00000543123 CPMP14384 443 aa12.06□□□□□ -0.48
RTN3-212ENST00000543123 PORP16435 677 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms