RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 OR4D11Q8NGI4 311 aa13□□□□□ -0.33
RTN3-210ENST00000540798 TBC1D15Q8TC07 691 aa13□□□□□ -0.33
RTN3-210ENST00000540798 SLC22A18Q96BI1 424 aa13□□□□□ -0.33
RTN3-210ENST00000540798 SMIM10Q96HG1 83 aa13□□□□□ -0.33
RTN3-210ENST00000540798 ALPK1Q96QP1 1244 aa13□□□□□ -0.33
RTN3-210ENST00000540798 SEMA3GQ9NS98 782 aa13□□□□□ -0.33
RTN3-210ENST00000540798 ZNF226Q9NYT6 803 aa13□□□□□ -0.33
RTN3-210ENST00000540798 FTSJ1Q9UET6 329 aa13□□□□□ -0.33
RTN3-210ENST00000540798 MMP17Q9ULZ9 603 aa13□□□□□ -0.33
RTN3-210ENST00000540798 KLK4Q9Y5K2 254 aa13□□□□□ -0.33
RTN3-210ENST00000540798 HS3ST3A1Q9Y663 406 aa13□□□□□ -0.33
RTN3-210ENST00000540798 TMEM247A6NEH6 219 aa13□□□□□ -0.33
RTN3-210ENST00000540798 LRRC72A6NJI9 287 aa13□□□□□ -0.33
RTN3-210ENST00000540798 VIPP01282 170 aa13□□□□□ -0.33
RTN3-210ENST00000540798 INHBBP09529 407 aa13□□□□□ -0.33
RTN3-210ENST00000540798 SRP54P61011 504 aaKnown RBP13□□□□□ -0.33
RTN3-210ENST00000540798 TFF2Q03403 129 aa13□□□□□ -0.33
RTN3-210ENST00000540798 DCTN2Q13561 401 aaKnown RBP13□□□□□ -0.33
RTN3-210ENST00000540798 CCINQ13939 588 aa13□□□□□ -0.33
RTN3-210ENST00000540798 GANABQ14697 944 aaKnown RBP13□□□□□ -0.33
RTN3-210ENST00000540798 GPR19Q15760 415 aa13□□□□□ -0.33
RTN3-210ENST00000540798 ZNF540Q8NDQ6 660 aa13□□□□□ -0.33
RTN3-210ENST00000540798 OR2A14Q96R47 310 aa13□□□□□ -0.33
RTN3-210ENST00000540798 BBS4Q96RK4 519 aa13□□□□□ -0.33
RTN3-210ENST00000540798 DGCR6LQ9BY27 220 aa13□□□□□ -0.33
RTN3-210ENST00000540798 ACOT13Q9NPJ3 140 aa13□□□□□ -0.33
RTN3-210ENST00000540798 RASSF1Q9NS23 344 aa13□□□□□ -0.33
RTN3-210ENST00000540798 ZCCHC3Q9NUD5 404 aaKnown RBP13□□□□□ -0.33
RTN3-210ENST00000540798 USP36Q9P275 1121 aaKnown RBP13□□□□□ -0.33
RTN3-210ENST00000540798 PSORS1C1Q9UIG5 152 aa13□□□□□ -0.33
RTN3-210ENST00000540798 CD207Q9UJ71 328 aa13□□□□□ -0.33
RTN3-210ENST00000540798 GLOD5A6NK44 160 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 GABARAPO95166 117 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 IGLV3-19P01714 112 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ASGR2P07307 311 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 MAP2K4P45985 399 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 STT3AP46977 705 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 PSMD7P51665 324 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 AQP6Q13520 282 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 TJAP1Q5JTD0 557 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 PRAMEF8Q5VWM4 474 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 PRAMEF7Q5VXH5 474 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 FBXO42Q6P3S6 717 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ZNF554Q86TJ5 538 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 CCDC103Q8IW40 242 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 SVOPQ8N4V2 548 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 OR5D16Q8NGK9 328 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 BBS10Q8TAM1 723 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 PHF10Q8WUB8 498 aaKnown RBP12.99□□□□□ -0.33
RTN3-210ENST00000540798 PROX1Q92786 737 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 CCDC90BQ9GZT6 254 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 SRMSQ9H3Y6 488 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 NMNAT1Q9HAN9 279 aaPredicted RBP12.99□□□□□ -0.33
RTN3-210ENST00000540798 ENOPH1Q9UHY7 261 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 SLC28A2O43868 658 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 GASTP01350 101 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 GPC1P35052 558 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ACTR1BP42025 376 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ACTR1AP61163 376 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 C6orf183Q5T699 404 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 KLHL17Q6TDP4 642 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 COMTD1Q86VU5 262 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 SLC44A3Q8N4M1 653 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 OR56A1Q8NGH5 318 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ZFPM2Q8WW38 1151 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 C10orf90Q96M02 699 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 MAPKAP1Q9BPZ7 522 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 WFDC6Q9BQY6 131 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ANKMY1Q9P2S6 941 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 TRBV4-1A0A0J9YWV2 114 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 TCRBV21S2A2A0A5A6 115 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ZAR1LA6NP61 321 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 SERPINB7O75635 380 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 OXSR1O95747 527 aaPredicted RBP12.99□□□□□ -0.33
RTN3-210ENST00000540798 GLULP15104 373 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ELAVL4P26378 380 aaKnown RBP12.99□□□□□ -0.33
RTN3-210ENST00000540798 AKT2P31751 481 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 MAN2A2P49641 1150 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 RAB8AP61006 207 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ZNF750Q32MQ0 723 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 FBXO43Q4G163 708 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 UBE2UQ5VVX9 321 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 BHLHB9Q6PI77 547 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ABI3BPQ7Z7G0 1075 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ASPGQ86U10 573 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 DEPDC4Q8N2C3 294 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 DNAJC22Q8N4W6 341 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 UTP15Q8TED0 518 aaKnown RBP12.99□□□□□ -0.33
RTN3-210ENST00000540798 KLHL6Q8WZ60 621 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 RORBQ92753 470 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 HSPBAP1Q96EW2 488 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 OR2A5Q96R48 311 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 BTBD2Q9BX70 525 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 ZNF556Q9HAH1 456 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 PILRAQ9UKJ1 303 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 FBXW2Q9UKT8 454 aa12.99□□□□□ -0.33
RTN3-210ENST00000540798 C2CD4DB7Z1M9 353 aa12.98□□□□□ -0.33
RTN3-210ENST00000540798 ZW10O43264 779 aa12.98□□□□□ -0.33
RTN3-210ENST00000540798 BCAS1O75363 584 aaPredicted RBP12.98□□□□□ -0.33
RTN3-210ENST00000540798 EPPINO95925 133 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms