RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 ANKRA2Q9H9E1 313 aa12.12□□□□□ -0.47
CCDC42-202ENST00000539522 SDR39U1Q9NRG7 319 aaPredicted RBP12.12□□□□□ -0.47
CCDC42-202ENST00000539522 PNO1Q9NRX1 252 aaKnown RBP12.12□□□□□ -0.47
CCDC42-202ENST00000539522 EHD3Q9NZN3 535 aa12.12□□□□□ -0.47
CCDC42-202ENST00000539522 ZNF639Q9UID6 485 aa12.12□□□□□ -0.47
CCDC42-202ENST00000539522 UTS2RQ9UKP6 389 aa12.12□□□□□ -0.47
CCDC42-202ENST00000539522 POLHQ9Y253 713 aa12.12□□□□□ -0.47
CCDC42-202ENST00000539522 MRPS33Q9Y291 106 aaKnown RBP12.12□□□□□ -0.47
CCDC42-202ENST00000539522 MAN2B2Q9Y2E5 1009 aa12.12□□□□□ -0.47
CCDC42-202ENST00000539522 SPACA6W5XKT8 324 aa12.12□□□□□ -0.47
CCDC42-202ENST00000539522 LOC100653049A0A140TA62 436 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 SCAMP2O15127 329 aaKnown RBP12.11□□□□□ -0.47
CCDC42-202ENST00000539522 SCN2BO60939 215 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 NME6O75414 186 aaPredicted RBP12.11□□□□□ -0.47
CCDC42-202ENST00000539522 ERAL1O75616 437 aaKnown RBP12.11□□□□□ -0.47
CCDC42-202ENST00000539522 KRT34O76011 436 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 PDGFAP04085 211 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 SLC35E2P0CK97 266 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 ITGAMP11215 1152 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 LAMP1P11279 417 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 PRPS2P11908 318 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 COX4I1P13073 169 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 EFNA1P20827 205 aaPredicted RBP12.11□□□□□ -0.47
CCDC42-202ENST00000539522 TLX1P31314 330 aaPredicted RBP12.11□□□□□ -0.47
CCDC42-202ENST00000539522 NME5P56597 212 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 SOX8P57073 446 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 STX4Q12846 297 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 STX5Q13190 355 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 HEPACAMQ14CZ8 416 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 ELAVL1Q15717 326 aaKnown RBP12.11□□□□□ -0.47
CCDC42-202ENST00000539522 PRICKLE4Q2TBC4 344 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 AGKQ53H12 422 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 FAM111BQ6SJ93 734 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 ST13P4Q8IZP2 240 aaPredicted RBP12.11□□□□□ -0.47
CCDC42-202ENST00000539522 ZSCAN1Q8NBB4 408 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 ELP5Q8TE02 316 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 TSPEARQ8WU66 669 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 METTL21AQ8WXB1 218 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 CTHRC1Q96CG8 243 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 KLHL29Q96CT2 875 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 COQ8BQ96D53 544 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 NUDT9Q9BW91 350 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 SEMA4CQ9C0C4 833 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 ING2Q9H160 280 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 GLIPR2Q9H4G4 154 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 CXorf21Q9HAI6 301 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 ZBTB20Q9HC78 741 aaPredicted RBP12.11□□□□□ -0.47
CCDC42-202ENST00000539522 ADAP2Q9NPF8 381 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 SLC52A3Q9NQ40 469 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 SLC35C2Q9NQQ7 365 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 MAT2BQ9NZL9 334 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 ZIM2Q9NZV7 527 aa12.11□□□□□ -0.47
CCDC42-202ENST00000539522 WBP11Q9Y2W2 641 aaKnown RBP12.11□□□□□ -0.47
CCDC42-202ENST00000539522 NSG1A0A0A6YYJ2 146 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 B2RBV5 119 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 C17orf105B2RV13 164 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 PCDH17O14917 1159 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 ZNF354AO60765 605 aaPredicted RBP12.1□□□□□ -0.47
CCDC42-202ENST00000539522 GUCY1B2O75343 617 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 SLC22A3O75751 556 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 C1QCP02747 245 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 ATP1B1P05026 303 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 SNRPB2P08579 225 aaKnown RBP12.1□□□□□ -0.47
CCDC42-202ENST00000539522 PORP16435 677 aaPredicted RBP12.1□□□□□ -0.47
CCDC42-202ENST00000539522 SERTAD2Q14140 314 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 SPRED3Q2MJR0 410 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 ZNF628Q5EBL2 1059 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 FHL5Q5TD97 284 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 PLAG1Q6DJT9 500 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 H3F3CQ6NXT2 135 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 CAMKMTQ7Z624 323 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 FUNDC1Q8IVP5 155 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 CCDC116Q8IYX3 515 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 EXD3Q8N9H8 876 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 ADCY4Q8NFM4 1077 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 FDCSPQ8NFU4 85 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 OR9I1Q8NGQ6 314 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 AMDHD1Q96NU7 426 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 IP6K3Q96PC2 410 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 BTBD10Q9BSF8 475 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 FAIM2Q9BWQ8 316 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 WDR41Q9HAD4 459 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 EFCAB1Q9HAE3 211 aa12.1□□□□□ -0.47
CCDC42-202ENST00000539522 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.1□□□□□ -0.47
CCDC42-202ENST00000539522 DYTNA2CJ06 578 aa12.09□□□□□ -0.47
CCDC42-202ENST00000539522 CBX7O95931 251 aa12.09□□□□□ -0.47
CCDC42-202ENST00000539522 SSTR4P31391 388 aa12.09□□□□□ -0.47
CCDC42-202ENST00000539522 GALNSP34059 522 aa12.09□□□□□ -0.47
CCDC42-202ENST00000539522 ASMTP46597 345 aa12.09□□□□□ -0.47
CCDC42-202ENST00000539522 ST13P50502 369 aaKnown RBP12.09□□□□□ -0.47
CCDC42-202ENST00000539522 NCALDP61601 193 aa12.09□□□□□ -0.47
CCDC42-202ENST00000539522 MRPS35P82673 323 aaKnown RBP12.09□□□□□ -0.47
CCDC42-202ENST00000539522 ACTN3Q08043 901 aaPredicted RBP12.09□□□□□ -0.47
CCDC42-202ENST00000539522 FUT7Q11130 342 aa12.09□□□□□ -0.47
CCDC42-202ENST00000539522 RAPSNQ13702 412 aa12.09□□□□□ -0.47
CCDC42-202ENST00000539522 TRMT12Q53H54 448 aaKnown RBP12.09□□□□□ -0.47
CCDC42-202ENST00000539522 B3GNTL1Q67FW5 361 aaPredicted RBP12.09□□□□□ -0.47
CCDC42-202ENST00000539522 PAOXQ6QHF9 649 aa12.09□□□□□ -0.47
CCDC42-202ENST00000539522 C16orf47Q6ZP98 133 aaPredicted RBP12.09□□□□□ -0.47
CCDC42-202ENST00000539522 ZNF551Q7Z340 670 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms