RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 FRMPD2BQ6IN97 320 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 CGB2Q6NT52 195 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 RNF165Q6ZSG1 346 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 ABHD13Q7L211 337 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 PAGE2Q7Z2X7 111 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 TRIM46Q7Z4K8 759 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 PRSS58Q8IYP2 241 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 OR4N4Q8N0Y3 316 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 ANKS4BQ8N8V4 417 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 FNDC5Q8NAU1 212 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 MDS2Q8NDY4 140 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 CEP70Q8NHQ1 597 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 NT5CQ8TCD5 201 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 RGMAQ96B86 450 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 MIEF2Q96C03 454 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 IMMP1LQ96LU5 166 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 F2RL3Q96RI0 385 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 MACROD1Q9BQ69 325 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 UCK2Q9BZX2 261 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 LRTM1Q9HBL6 345 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 C1orf109Q9NX04 203 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 PPT2Q9UMR5 302 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 NPIPA1Q9UND3 350 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 LOC102723996A0A087X1L8 192 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 NKX2-6A6NCS4 301 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 PROM1O43490 865 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 SNX3O60493 162 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 CTAG2O75638 210 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 NCF2P19878 526 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 SSR2P43308 183 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 IDH3AP50213 366 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 PLA2G16P53816 162 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 STX1BP61266 288 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 SKP1P63208 163 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 HSF1Q00613 529 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 ALDH6A1Q02252 535 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 EEF1A2Q05639 463 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 CUL3Q13618 768 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 RPS6KA2Q15349 733 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 HKDC1Q2TB90 917 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 XKR7Q5GH72 579 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 DEPDC1Q5TB30 811 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 ABHD17BQ5VST6 288 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 MAVSQ7Z434 540 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 VN1R5Q7Z5H4 357 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 VN1R4Q7Z5H5 301 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 CCDC197Q8NCU1 140 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 OR2T11Q8NH01 316 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 ACTRT2Q8TDY3 377 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 CREB3L4Q8TEY5 395 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 GAL3ST3Q96A11 431 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 SCMH1Q96GD3 660 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 C3orf30Q96M34 536 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 FRMD6Q96NE9 622 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 QRFPRQ96P65 431 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 SIGLEC12Q96PQ1 595 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 EBF4Q9BQW3 602 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 CCDC28BQ9BUN5 200 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 HES7Q9BYE0 225 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 ROGDIQ9GZN7 287 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNF700Q9H0M5 742 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 AKTIPQ9H8T0 292 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNF304Q9HCX3 659 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 PSD3Q9NYI0 1048 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 COQ3Q9NZJ6 369 aa11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNF282Q9UDV7 671 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 EIF3LQ9Y262 564 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 RUVBL1Q9Y265 456 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-208ENST00000538933 DNAJC13O75165 2243 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 A0A0G2JN53 185 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 GNG14A0A1W2PPG7 69 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 LRIT2A6NDA9 550 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 IDSB3KWA1 339 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 E9PBE3 544 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 LSM1O15116 133 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 P2RX6O15547 441 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 SEMA3DO95025 777 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 ZNF888P0CJ79 500 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 ABOP16442 354 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 EFNA3P52797 238 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 RAB8AP61006 207 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 OCA2Q04671 838 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 MUM1Q2TAK8 710 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 FAM214AQ32MH5 1076 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 LSM12Q3MHD2 195 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 RNFT1Q5M7Z0 435 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 H3F3CQ6NXT2 135 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 CYP20A1Q6UW02 462 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 Q6ZSR9 355 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 CXXC5Q7LFL8 322 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 NUDT13Q86X67 352 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 C1orf52Q8N6N3 182 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 KCT2Q8NC54 265 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 OR2L5Q8NG80 312 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 CDC26Q8NHZ8 85 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 C10orf82Q8WW14 230 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 KCNC2Q96PR1 638 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 ALPK1Q96QP1 1244 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 OR52B2Q96RD2 323 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 C1orf50Q9BV19 199 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms