RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 SH2D2AQ9NP31 389 aa12.1□□□□□ -0.47
RTN3-207ENST00000536011 ADAM29Q9UKF5 820 aa12.1□□□□□ -0.47
RTN3-207ENST00000536011 PCDHGB3Q9Y5G1 929 aa12.1□□□□□ -0.47
RTN3-207ENST00000536011 DNAJC13O75165 2243 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 C2orf92A0A1B0GVN3 265 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 A0A1W2PR48 441 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 LRRC14BA6NHZ5 514 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 GLOD5A6NK44 160 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 HRKO00198 91 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 ZNF354AO60765 605 aaPredicted RBP12.09□□□□□ -0.47
RTN3-207ENST00000536011 PRKRAO75569 313 aaKnown RBP12.09□□□□□ -0.47
RTN3-207ENST00000536011 URI1O94763 535 aaPredicted RBP12.09□□□□□ -0.47
RTN3-207ENST00000536011 NADKO95544 446 aaPredicted RBP12.09□□□□□ -0.47
RTN3-207ENST00000536011 ACSL3O95573 720 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 IGFBP2P18065 325 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 MSX1P28360 303 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 PIGAP37287 484 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 RPS6KA2Q15349 733 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 NTRK2Q16620 822 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 GGTA1PQ4G0N0 100 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 CDH24Q86UP0 819 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 TP53INP1Q96A56 240 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 PHF21BQ96EK2 531 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 ZNF597Q96LX8 424 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 FMO2Q99518 471 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 TTYH2Q9BSA4 534 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 DOHHQ9BU89 302 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 NTMT1Q9BV86 223 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 NMRK1Q9NWW6 199 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 XPR1Q9UBH6 696 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 PCTPQ9UKL6 214 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 HRH3Q9Y5N1 445 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 LIPGQ9Y5X9 500 aa12.09□□□□□ -0.47
RTN3-207ENST00000536011 PHF3Q92576 2039 aaKnown RBP12.09□□□□□ -0.47
RTN3-207ENST00000536011 ANKRD33BA6NCL7 494 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 NKX2-6A6NCS4 301 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 GOLGA6L10A6NI86 522 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 OR7A17O14581 309 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 CDH16O75309 829 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 TOXO94900 526 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 OTCP00480 354 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 MAGEA12P43365 314 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 ZFP36L2P47974 494 aaKnown RBP12.08□□□□□ -0.48
RTN3-207ENST00000536011 NEK2P51955 445 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 MAPK12P53778 367 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 TFF3Q07654 80 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 CCNYL2Q5T2Q4 361 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 C1orf185Q5T7R7 199 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 PRAMEF20Q5VT98 475 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 TMEM198Q66K66 360 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 DGAT2L6Q6ZPD8 337 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 CCDC71Q8IV32 467 aaPredicted RBP12.08□□□□□ -0.48
RTN3-207ENST00000536011 CNPY4Q8N129 248 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 LRRC25Q8N386 305 aaPredicted RBP12.08□□□□□ -0.48
RTN3-207ENST00000536011 RPRMLQ8N4K4 120 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 OR7G1Q8NGA0 311 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 OR10G3Q8NGC4 313 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 OR4K14Q8NGD5 310 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 OR52B6Q8NGF0 335 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 JSRP1Q96MG2 331 aaPredicted RBP12.08□□□□□ -0.48
RTN3-207ENST00000536011 CDK15Q96Q40 435 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 SECISBP2Q96T21 854 aaKnown RBP12.08□□□□□ -0.48
RTN3-207ENST00000536011 PAFAH2Q99487 392 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 MRPL57Q9BQC6 102 aaKnown RBP12.08□□□□□ -0.48
RTN3-207ENST00000536011 MRPL46Q9H2W6 279 aaKnown RBP12.08□□□□□ -0.48
RTN3-207ENST00000536011 CDC42EP4Q9H3Q1 356 aaKnown RBP12.08□□□□□ -0.48
RTN3-207ENST00000536011 CXorf21Q9HAI6 301 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 ACKR4Q9NPB9 350 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 KCNN3Q9UGI6 736 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 ZNF180Q9UJW8 692 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 CFL2Q9Y281 166 aa12.08□□□□□ -0.48
RTN3-207ENST00000536011 CHCHD2Q9Y6H1 151 aaPredicted RBP12.08□□□□□ -0.48
RTN3-207ENST00000536011 TEP1Q99973 2627 aaKnown RBP12.08□□□□□ -0.48
RTN3-207ENST00000536011 SNX4O95219 450 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 GBAP04062 536 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 KLK1P06870 262 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 CELA3AP09093 270 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 GLI4P10075 376 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 KRT15P19012 456 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 GDF1P27539 372 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 PEX19P40855 299 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 TRAF3Q13114 568 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 SF3B4Q15427 424 aaKnown RBP eCLIP12.07□□□□□ -0.48
RTN3-207ENST00000536011 SLC25A35Q3KQZ1 300 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 GLE1Q53GS7 698 aaKnown RBP12.07□□□□□ -0.48
RTN3-207ENST00000536011 LGSNQ5TDP6 509 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 LYPD8Q6UX82 237 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 MILR1Q7Z6M3 343 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 DMRTC2Q8IXT2 367 aaPredicted RBP12.07□□□□□ -0.48
RTN3-207ENST00000536011 PLD6Q8N2A8 252 aaKnown RBP12.07□□□□□ -0.48
RTN3-207ENST00000536011 C17orf47Q8NEP4 570 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 NEIL3Q8TAT5 605 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 TRPC4APQ8TEL6 797 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 IFT81Q8WYA0 676 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 DIO2Q92813 273 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 LRRC46Q96FV0 321 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 C16orf45Q96MC5 204 aaPredicted RBP12.07□□□□□ -0.48
RTN3-207ENST00000536011 ZNF559Q9BR84 538 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 UCK2Q9BZX2 261 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 BRF2Q9HAW0 419 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms