RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	ZNF407	Q9C0G0	2248 aa		10.66	□□□□□ -0.7
CTNND1-238	ENST00000534647	NIPBL	Q6KC79	2804 aa	eCLIP	10.66	□□□□□ -0.7	1e-6	■□□□□ 9
CTNND1-238	ENST00000534647	ZFHX3	Q15911	3703 aa		10.66	□□□□□ -0.7
CTNND1-238	ENST00000534647		A0A0G2JN53	185 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	NPEPPSL1	A6NEC2	478 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	FAM159B	A6NKW6	160 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	SYT5	O00445	386 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	ZNF354A	O60765	605 aa	Predicted RBP	10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	PRAMEF4	O60810	478 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	SCEL	O95171	688 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	WISP3	O95389	354 aa	Predicted RBP	10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647		P04436	131 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	CPE	P16870	476 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	CNTF	P26441	200 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	CERS1	P27544	350 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	GCA	P28676	217 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	CASP2	P42575	452 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	KCNC1	P48547	511 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	MAN2A2	P49641	1150 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	IGLV3-21	P80748	117 aa	Predicted RBP	10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	STX4	Q12846	297 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	TSN	Q15631	228 aa	Known RBP	10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	TBCC	Q15814	346 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	ZNF791	Q3KP31	576 aa	Predicted RBP	10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	WLS	Q5T9L3	541 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	RIPPLY2	Q5TAB7	128 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	PRAMEF9	Q5VWM5	478 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	ZNF585A	Q6P3V2	769 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	ARSK	Q6UWY0	536 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	FAM47E	Q6ZV65	393 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	CLNK	Q7Z7G1	428 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	TRABD2A	Q86V40	505 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	LIX1L	Q8IVB5	337 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	DND1	Q8IYX4	353 aa	Known RBP	10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	SLC15A4	Q8N697	577 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	NUBPL	Q8TB37	319 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	SLC2A12	Q8TD20	617 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	ZNF721	Q8TF20	911 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	DCAKD	Q8WVC6	231 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	ANKRD49	Q8WVL7	239 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	DYDC1	Q8WWB3	177 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	CCT6B	Q92526	530 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	MTBP	Q96DY7	904 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	KCNC2	Q96PR1	638 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	CSF3R	Q99062	836 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	TBCD	Q9BTW9	1192 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	EFCAB11	Q9BUY7	163 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	OR8D2	Q9GZM6	311 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	DERL2	Q9GZP9	239 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	ACKR4	Q9NPB9	350 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	INTS9	Q9NV88	658 aa	Known RBP	10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	QPCTL	Q9NXS2	382 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	DNAJB12	Q9NXW2	375 aa	Known RBP	10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	NSMCE4A	Q9NXX6	385 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	B4GALT7	Q9UBV7	327 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	ACAD8	Q9UKU7	415 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	EDAR	Q9UNE0	448 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	ATG4B	Q9Y4P1	393 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	LIPG	Q9Y5X9	500 aa		10.65	□□□□□ -0.7
CTNND1-238	ENST00000534647	AKAP9	Q99996	3911 aa		10.65	□□□□□ -0.71
CTNND1-238	ENST00000534647	FAM95C	A0A1B0GW59	222 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	C17orf105	B2RV13	164 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	CLGN	O14967	610 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	TAPBP	O15533	448 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	SHOX2	O60902	331 aa	Predicted RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	ETHE1	O95571	254 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	IGKV3-11	P04433	115 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	SNRPA	P09012	282 aa	Known RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	FOSL1	P15407	271 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	CHN1	P15882	459 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	TNNI3	P19429	210 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	GPC1	P35052	558 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	ADH7	P40394	386 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	GUCY1A3	Q02108	690 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	PCDH1	Q08174	1060 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	PIN1	Q13526	163 aa	Predicted RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	LAPTM5	Q13571	262 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	C18orf21	Q32NC0	220 aa	Predicted RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	TMEM35A	Q53FP2	167 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	C1orf185	Q5T7R7	199 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	SLC22A10	Q63ZE4	541 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	TTC19	Q6DKK2	380 aa	Predicted RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	SULT1C3	Q6IMI6	304 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	FRA10AC1	Q70Z53	315 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	UBE3D	Q7Z6J8	389 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	LRRC25	Q8N386	305 aa	Predicted RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	ZNF321P	Q8N8H1	164 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	ANKRD42	Q8N9B4	389 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	PAQR8	Q8TEZ7	354 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	ANKRD9	Q96BM1	317 aa	Predicted RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	SENP5	Q96HI0	755 aa	Predicted RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	F2RL3	Q96RI0	385 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	TMEM79	Q9BSE2	394 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	POLDIP3	Q9BY77	421 aa	Known RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	RHOJ	Q9H4E5	214 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	COPS7B	Q9H9Q2	264 aa	Predicted RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	RASSF1	Q9NS23	344 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	DNAJC11	Q9NVH1	559 aa		10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	TUBA8	Q9NY65	449 aa	Predicted RBP	10.64	□□□□□ -0.71
CTNND1-238	ENST00000534647	ST6GALNAC2	Q9UJ37	374 aa		10.64	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms