RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 DNASE1L1P49184 302 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 XKP51811 444 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 MAPK12P53778 367 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 PKNOX1P55347 436 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 DNAJB13P59910 316 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 PHEXP78562 749 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 ELOAQ14241 798 aaKnown RBP9.83□□□□□ -0.84
CD44-227ENST00000528086 LTB4RQ15722 352 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 PRICKLE4Q2TBC4 344 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 GALNT18Q6P9A2 607 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 MAMDC2Q7Z304 686 aaPredicted RBP9.83□□□□□ -0.84
CD44-227ENST00000528086 DOLPP1Q86YN1 238 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 SPPL2CQ8IUH8 684 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 SLC22A9Q8IVM8 553 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 C10orf107Q8IVU9 208 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 MARVELD2Q8N4S9 558 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 ADCY4Q8NFM4 1077 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 OR10G3Q8NGC4 313 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 METTL6Q8TCB7 284 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 ASB15Q8WXK1 588 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.83□□□□□ -0.84
CD44-227ENST00000528086 RIT1Q92963 219 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 RBM18Q96H35 190 aaKnown RBP9.83□□□□□ -0.84
CD44-227ENST00000528086 CCDC77Q9BR77 488 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 CENPKQ9BS16 269 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 SHCBP1LQ9BZQ2 653 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 TUBB1Q9H4B7 451 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 ZDHHC11Q9H8X9 412 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 MID1IP1Q9NPA3 183 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 SIRT5Q9NXA8 310 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 MAT2BQ9NZL9 334 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 VPS29Q9UBQ0 182 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 LGALS13Q9UHV8 139 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 CNOT11Q9UKZ1 510 aaKnown RBP9.83□□□□□ -0.84
CD44-227ENST00000528086 SNX6Q9UNH7 406 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 KLF13Q9Y2Y9 288 aaPredicted RBP9.83□□□□□ -0.84
CD44-227ENST00000528086 PLLPQ9Y342 182 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 CHCHD2Q9Y6H1 151 aaPredicted RBP9.83□□□□□ -0.84
CD44-227ENST00000528086 LRBAP50851 2863 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 APCP25054 2843 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 TRGV8A0A0C4DH27 118 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 SYNDIG1LA6NDD5 238 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 A8MVJ9 347 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 B4DXG7 233 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 CDH16O75309 829 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 LRATO95237 230 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 MLYCDO95822 493 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 IL3P08700 152 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 FBXO45P0C2W1 286 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 RFPL3SP0C7P2 107 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 MYL2P10916 166 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 HSD3B1P14060 373 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 CPA3P15088 417 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 ZNF24P17028 368 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 KRT15P19012 456 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 HSD3B2P26439 372 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 DCTP40126 519 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 MAP4K2Q12851 820 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 CSTF3Q12996 717 aaKnown RBP9.82□□□□□ -0.84
CD44-227ENST00000528086 EXOSC7Q15024 291 aaKnown RBP9.82□□□□□ -0.84
CD44-227ENST00000528086 KIAA0040Q15053 153 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 ERCC6LQ2NKX8 1250 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 UGT3A2Q3SY77 523 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 TRMT12Q53H54 448 aaKnown RBP9.82□□□□□ -0.84
CD44-227ENST00000528086 KRTCAP3Q53RY4 240 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 FNDC7Q5VTL7 733 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 BICRALQ6AI39 1079 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 WDR93Q6P2C0 686 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 C3P1Q6ZMU1 363 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 TRIM46Q7Z4K8 759 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 GPALPP1Q8IXQ4 340 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 RPRMLQ8N4K4 120 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 TMEM251Q8N6I4 163 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 HORMAD2Q8N7B1 307 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 CCNYL1Q8N7R7 359 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 OR4K14Q8NGD5 310 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 OR6Y1Q8NGX8 325 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 OR2T11Q8NH01 316 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 PAQR8Q8TEZ7 354 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 C16orf78Q8WTQ4 265 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 CAVIN3Q969G5 261 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 SPACA9Q96E40 222 aaPredicted RBP9.82□□□□□ -0.84
CD44-227ENST00000528086 DMRTA2Q96SC8 542 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 MECRQ9BV79 373 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 EBPLQ9BY08 206 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 PARD6BQ9BYG5 372 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 TTTY12Q9BZ98 90 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 HPF1Q9NWY4 346 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 MKS1Q9NXB0 559 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 TUBA8Q9NY65 449 aaPredicted RBP9.82□□□□□ -0.84
CD44-227ENST00000528086 MCM8Q9UJA3 840 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 SH3BGRL2Q9UJC5 107 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 DLGAP4Q9Y2H0 992 aa9.82□□□□□ -0.84
CD44-227ENST00000528086 NUP214P35658 2090 aaPredicted RBP9.82□□□□□ -0.84
CD44-227ENST00000528086 A0A1B0GTH9 108 aa9.81□□□□□ -0.84
CD44-227ENST00000528086 A0A1B0GUH1 482 aa9.81□□□□□ -0.84
CD44-227ENST00000528086 TLDC2A0PJX2 215 aa9.81□□□□□ -0.84
CD44-227ENST00000528086 C1orf226A1L170 272 aa9.81□□□□□ -0.84
CD44-227ENST00000528086 TMEM233B4DJY2 109 aa9.81□□□□□ -0.84
CD44-227ENST00000528086 CCL21O00585 134 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms