RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 DDX31Q9H8H2 851 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 PIGVQ9NUD9 493 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 NTMQ9P121 344 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 KLHL42Q9P2K6 505 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 FAM198AQ9UFP1 575 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 A0A1B0GWJ7 208 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 SOWAHBA6NEL2 793 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 TLR5O60602 858 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 MSCO60682 206 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 CLN5O75503 358 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 MT-ND4P03905 459 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 AHCYP23526 432 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 PTPN6P29350 595 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 S100A3P33764 101 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 NR0B1P51843 470 aaKnown RBP11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 MBTPS1Q14703 1052 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 PON3Q15166 354 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 TAF1CQ15572 869 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 SLC25A52Q3SY17 297 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 MANEAQ5SRI9 462 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 ZPBP2Q6X784 338 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 ZNF621Q6ZSS3 439 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 Q6ZTK2 550 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 TMEM17Q86X19 198 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 TOMM5Q8N4H5 51 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 ZFP3Q96NJ6 502 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 MARK1Q9P0L2 795 aa11.46□□□□□ -0.57
LIMCH1-213ENST00000511496 ABHD14A-ACY1A0A1B0GW23 586 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 PLSCR5A0PG75 271 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 RFXANKO14593 260 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 KERAO60938 352 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 SOX14O95416 240 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 SIM1P81133 766 aaPredicted RBP11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 FABP5Q01469 135 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 FABP9Q0Z7S8 132 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 VMACQ2NL98 169 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 EIF2S3LQ2VIR3 472 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 SFRP4Q6FHJ7 346 aaPredicted RBP11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 TMUB2Q71RG4 321 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 BTN2A1Q7KYR7 527 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 DNAJB7Q7Z6W7 309 aaPredicted RBP11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 NANOGP1Q8N7R0 232 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 STK35Q8TDR2 534 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 PPP3R2Q96LZ3 170 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 EPYCQ99645 322 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 OSMRQ99650 979 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 C19orf43Q9BQ61 176 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 TMED9Q9BVK6 235 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 GAREM1Q9H706 876 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 KCNK12Q9HB15 430 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 SERHLQ9NQF3 203 aa11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 MRPL15Q9P015 296 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-213ENST00000511496 KPNA3O00505 521 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 PRG2P13727 222 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 ANXA8P13928 327 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 DRD2P14416 443 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 GABRA1P14867 456 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 HOXB6P17509 224 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 SLC6A4P31645 630 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 DOK7Q18PE1 504 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 MFSD14CQ5VZR4 134 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 SLC27A1Q6PCB7 646 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 GSG1LQ6UXU4 331 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 SYNPOQ8N3V7 929 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 KLHL36Q8N4N3 616 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 ATPAF2Q8N5M1 289 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 MS4A4EQ96PG1 132 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 TSSK3Q96PN8 268 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 YIPF4Q9BSR8 244 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 UCK1Q9HA47 277 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 EPHA6Q9UF33 1036 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 POLLQ9UGP5 575 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 ACSL6Q9UKU0 697 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 PCDHGC4Q9Y5F7 938 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 PCDHGA5Q9Y5G8 931 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 PCDHGA1Q9Y5H4 931 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 RNF215Q9Y6U7 377 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 C2orf78A6NCI8 922 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 WNT9AO14904 365 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 SLC7A4O43246 635 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 SUV39H1O43463 412 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 OIP5O43482 229 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 SUSD5O60279 629 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 B4GALT3O60512 393 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 FZD7O75084 574 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 HPP00738 406 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 PRSS56P0CW18 603 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 ITPKAP23677 461 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 ARL2P36404 184 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 SUPT20HL1Q3ZLR7 823 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 DPPA2Q7Z7J5 298 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 VSIG10LQ86VR7 867 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 MARCH9Q86YJ5 346 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 SVBPQ8N300 66 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 KAT2AQ92830 837 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 ZC3H10Q96K80 434 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 PDCD2LQ9BRP1 358 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 NFKBIZQ9BYH8 718 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 TGIF2Q9GZN2 237 aa11.45□□□□□ -0.58
LIMCH1-213ENST00000511496 PLEKHM1Q9Y4G2 1056 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms