RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ROCK1Q13464 1354 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 RPAP1Q9BWH6 1393 aaPredicted RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 ARHGAP23Q9P227 1491 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 ZNFX1Q9P2E3 1918 aaKnown RBP1.65□□□□□ -2.14
NUP54-208ENST00000508604 IGKV2-28A0A075B6P5 120 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 TRAV18A0A075B6X5 111 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 SYNJ2BP-COX16A0A087WUM0 186 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CLRN2A0PK11 232 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CCDC162PA2VCL2 907 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 A8MXE2 369 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 TMEM150CB9EJG8 249 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 LSM1O15116 133 aaKnown RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 ATP8B1O43520 1251 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 NMT2O60551 498 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 LRP3O75074 770 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 ATP6V1G1O75348 118 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 ZNF254O75437 659 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 ZNF189O75820 626 aaPredicted RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 WISP3O95389 354 aaPredicted RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 PRAMEF12O95522 483 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 FGF19O95750 216 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 IGKV2D-28P01615 120 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 S100A6P06703 90 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 RHOXF2BP0C7M4 288 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 TROVE2P10155 538 aaKnown RBP eCLIP1.65□□□□□ -2.15
NUP54-208ENST00000508604 GLULP15104 373 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 DESP17661 470 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CPT2P23786 658 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 U2AF2P26368 475 aaKnown RBP eCLIP1.65□□□□□ -2.15
NUP54-208ENST00000508604 GCKP35557 465 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 SLC1A3P43003 542 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CCNHP51946 323 aaPredicted RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 KRT83P78385 493 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 BASP1P80723 227 aaKnown RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 DR1Q01658 176 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 IL10RBQ08334 325 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 PPIDQ08752 370 aaKnown RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 CNTN1Q12860 1018 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 ALCAMQ13740 583 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 DPYSQ14117 519 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 PPP1R3AQ16821 1122 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CCDC57Q2TAC2 916 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 GPR157Q5UAW9 335 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 OTPQ5XKR4 325 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 THOC7Q6I9Y2 204 aaKnown RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 RBPMS2Q6ZRY4 209 aaKnown RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 IQCA1Q86XH1 822 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 ITPRIPQ8IWB1 547 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 LRRC43Q8N309 656 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 ARL14Q8N4G2 192 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 TC2NQ8N9U0 490 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 SPERTQ8NA61 448 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CAMKVQ8NCB2 501 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CCDC110Q8TBZ0 833 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 ADAMTS16Q8TE57 1224 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CCDC114Q96M63 670 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CASD1Q96PB1 797 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CGREF1Q99674 301 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 RHOXF2Q9BQY4 288 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 UQCC2Q9BRT2 126 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 MRPL9Q9BYD2 267 aaKnown RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 SLC25A39Q9BZJ4 359 aaPredicted RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 TRIM4Q9C037 500 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 NSRP1Q9H0G5 558 aaKnown RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 OR10A4Q9H209 315 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 C10orf88Q9H8K7 445 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 PARVGQ9HBI0 331 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 ZCCHC17Q9NP64 241 aaKnown RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 ARGLU1Q9NWB6 273 aaPredicted RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 FKBP14Q9NWM8 211 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 PAIP2BQ9ULR5 123 aaKnown RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 RNF24Q9Y225 148 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 SNX5Q9Y5X3 404 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 GPRASP1Q5JY77 1395 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 CARMIL1Q5VZK9 1371 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 VIRMAQ69YN4 1812 aaKnown RBP1.65□□□□□ -2.15
NUP54-208ENST00000508604 CCDC171Q6TFL3 1326 aa1.65□□□□□ -2.15
NUP54-208ENST00000508604 ROCK2O75116 1388 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 MAP3K5Q99683 1374 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 IQANK1A0A1B0GTG1 560 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 TCRBV21S2A2A0A5A6 115 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 FAM231BA6NCW3 169 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 PRSS46E5RG02 174 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 NDUFAB1O14561 156 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CHUKO15111 745 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 PGRMC2O15173 223 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ERLIN2O94905 339 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CELF2O95319 508 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 PAHP00439 452 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 PDGFBP01127 241 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 KRT13P13646 458 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 P4HA1P13674 534 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 HPDP32754 393 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 CA8P35219 290 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 EPS15P42566 896 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 BLVRAP53004 296 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 MTCP1P56278 107 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ROR1Q01973 937 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 PKN2Q16513 984 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 LETM2Q2VYF4 491 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms