RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 PHF7Q9BWX1 381 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-207ENST00000504761 KAT8Q9H7Z6 458 aaKnown RBP13.37□□□□□ -0.27
TCOF1-207ENST00000504761 NECTIN3Q9NQS3 549 aa13.37□□□□□ -0.27
TCOF1-207ENST00000504761 BTNL2Q9UIR0 455 aa13.37□□□□□ -0.27
TCOF1-207ENST00000504761 HCN2Q9UL51 889 aa13.37□□□□□ -0.27
TCOF1-207ENST00000504761 LIPT1Q9Y234 373 aa13.37□□□□□ -0.27
TCOF1-207ENST00000504761 TRBV5-4A0A0C4DH59 114 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 A0A0J9YY10 115 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 H0YGG7 62 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 GFYI3L273 518 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 SMSP52788 366 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 ARF3P61204 181 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-207ENST00000504761 FCHO2Q0JRZ9 810 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 OR9Q2Q8NGE9 314 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 PRRG4Q9BZD6 226 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 MYNNQ9NPC7 610 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 CFL2Q9Y281 166 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 CAB39Q9Y376 341 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-207ENST00000504761 PRAMEF33A0A0G2JMD5 474 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 DAPL1A0PJW8 107 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 AHCYL1O43865 530 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 BMP2P12643 396 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 DPP6P42658 865 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 BCL7AQ4VC05 210 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 TMEM164Q5U3C3 297 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 SLC44A3Q8N4M1 653 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 UBTD2Q8WUN7 234 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 TESCQ96BS2 214 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 HSPBAP1Q96EW2 488 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 ZNF583Q96ND8 569 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 ALOXE3Q9BYJ1 711 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 EPHX3Q9H6B9 360 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 DCAF13Q9NV06 445 aaKnown RBP13.36□□□□□ -0.27
TCOF1-207ENST00000504761 SIT1Q9Y3P8 196 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 SNX4O95219 450 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 FESP07332 822 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 MYL9P24844 172 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 RBM48Q5RL73 367 aaKnown RBP13.36□□□□□ -0.27
TCOF1-207ENST00000504761 CCNJQ5T5M9 372 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 METTL4Q8N3J2 472 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 SUN3Q8TAQ9 357 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 AASSQ9UDR5 926 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 SPTA1P02549 2419 aa13.36□□□□□ -0.27
TCOF1-207ENST00000504761 KLHL18O94889 574 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 JMJD7P0C870 316 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 FBLP22087 321 aaKnown RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 ATP5A1P25705 553 aaKnown RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 RPS3AP61247 264 aaKnown RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 NPRL3Q12980 569 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 UGT3A2Q3SY77 523 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 C6orf141Q5SZD1 244 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 SYCE2Q6PIF2 218 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 MSANTD1Q6ZTZ1 278 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 IZUMO1Q8IYV9 350 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 UXS1Q8NBZ7 420 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 OR2L8Q8NGY9 312 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 MOAP1Q96BY2 351 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 LRRC3BQ96PB8 259 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 CRNNQ9UBG3 495 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 H3BSH0 61 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 GSTM3P21266 225 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 EXOSC7Q15024 291 aaKnown RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 GGTA1PQ4G0N0 100 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 PIP5KL1Q5T9C9 394 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 PRPF38BQ5VTL8 546 aaKnown RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 MRGPRX3Q96LB0 322 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 MAPKAP1Q9BPZ7 522 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 ARMC1Q9NVT9 282 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 FAM118AQ9NWS6 357 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 SLC30A4O14863 429 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 HMGN1P05114 100 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 RETP07949 1114 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 EPHA5P54756 1037 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 YPEL5P62699 121 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 SYPL1Q16563 259 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 RNASE12Q5GAN4 147 aaKnown RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 TMEM236Q5W0B7 351 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 C18orf63Q68DL7 685 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 SDR16C5Q8N3Y7 309 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 ENKURQ8TC29 256 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 UBASH3BQ8TF42 649 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 GAL3ST3Q96A11 431 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 SNTG1Q9NSN8 517 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 SPHK1Q9NYA1 384 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 WBP11Q9Y2W2 641 aaKnown RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 ASXL3Q9C0F0 2248 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 SMIM30A4D0T7 59 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 OTOL1A6NHN0 477 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 CPNE3O75131 537 aaKnown RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 SEMA3DO95025 777 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 GNAO1P09471 354 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 TCF3P15923 654 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 UGT2B7P16662 529 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 CDH11P55287 796 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 CSTF1Q05048 431 aaKnown RBP13.35□□□□□ -0.27
TCOF1-207ENST00000504761 BNIP3Q12983 259 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 ZNF750Q32MQ0 723 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 LYSMD4Q5XG99 296 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 LILRA2Q8N149 483 aa13.35□□□□□ -0.27
TCOF1-207ENST00000504761 ELL3Q9HB65 397 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 152.1 ms